RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CEMP1Q6PRD7 247 aaPredicted RBP5.82□□□□□ -1.48
USP40-216ENST00000485943 ZNF705AQ6ZN79 300 aaPredicted RBP5.82□□□□□ -1.48
USP40-216ENST00000485943 ZNF493Q6ZR52 646 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 UBE2DNLQ8IWF7 75 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 TCTE3Q8IZS6 198 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 Q8NAQ8 132 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 ZNF680Q8NEM1 530 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 TREM1Q9NP99 234 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 NBEAL2Q6ZNJ1 2754 aa5.82□□□□□ -1.48
USP40-216ENST00000485943 TRGV2A0A075B6R0 118 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 FBLL1A6NHQ2 334 aaKnown RBP5.81□□□□□ -1.48
USP40-216ENST00000485943 LYRM9A8MSI8 78 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 DIRC3C9JPN6 131 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 PRAC2D3DTV9 90 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 NDUFB4O95168 129 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 LY6G6CO95867 125 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 C1QBP02746 253 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 AKR1C3P42330 323 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 RAB5CP51148 216 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 ZNF415Q09FC8 603 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 GFI1BQ5VTD9 330 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 DPPA3Q6W0C5 159 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 Q6ZNX1 250 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 C9orf47Q6ZRZ4 202 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 ZNF767PQ75MW2 155 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 PRNTQ86SH4 94 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 SLC51BQ86UW2 128 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 CYB561D1Q8N8Q1 229 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 CSNK1G2-AS1Q8NCQ2 148 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 Q8TAT8 98 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 TMEM263Q8WUH6 116 aaKnown RBP5.81□□□□□ -1.48
USP40-216ENST00000485943 TMED6Q8WW62 240 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 ST6GAL2Q96JF0 529 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 VGLL1Q99990 258 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 ZNF492Q9P255 531 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 COL7A1Q02388 2944 aa5.81□□□□□ -1.48
USP40-216ENST00000485943 TRGV11A0A075B6L2 103 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 TRAV21A0A0B4J279 112 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 A0A1W2PRE2 83 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 NMBP08949 121 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 GIG44P09565 113 aaPredicted RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 RBMY1A1P0DJD3 496 aaKnown RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 RBMY1CP0DJD4 496 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 GNG5P63218 68 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 BTN1A1Q13410 526 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 RBMY1FQ15415 496 aaKnown RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 LGALSLQ3ZCW2 172 aaPredicted RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 SAPCD1Q5SSQ6 148 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 AMTNQ6UX39 209 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 Q6ZTC4 211 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 C1orf158Q8N1D5 194 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 EIF4E3Q8N5X7 224 aaKnown RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 ARL6IP6Q8N6S5 226 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 ATG101Q9BSB4 218 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 NDUFAF3Q9BU61 184 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 AGPAT4-IT1Q9H0P7 198 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 NOP10Q9NPE3 64 aaKnown RBP5.8□□□□□ -1.48
USP40-216ENST00000485943 LENEPQ9Y5L5 61 aa5.8□□□□□ -1.48
USP40-216ENST00000485943 IGHV1OR15-1A0A075B7D0 117 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 TRGV1A0A0A0MS02 117 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 F5H768 121 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 ATP5G1P05496 136 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 S100A4P26447 101 aaKnown RBP5.79□□□□□ -1.48
USP40-216ENST00000485943 ATP5G3P48201 142 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 TCTAP57738 103 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 FLI1Q01543 452 aaPredicted RBP5.79□□□□□ -1.48
USP40-216ENST00000485943 SMUG1Q53HV7 270 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 MUC21Q5SSG8 566 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 OR11H4Q8NGC9 324 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 HIST1H2BAQ96A08 127 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 KCNS1Q96KK3 526 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 SGK494Q96LW2 274 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 C1orf43Q9BWL3 253 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 SDF2L1Q9HCN8 221 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 DKK2Q9UBU2 259 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 EPDR1Q9UM22 224 aa5.79□□□□□ -1.48
USP40-216ENST00000485943 TRBV7-9A0A0J9YWB2 115 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 GAGE12BA1L429 117 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 A8MTW9 85 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 PEX7O00628 323 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 CRXO43186 299 aaPredicted RBP5.78□□□□□ -1.48
USP40-216ENST00000485943 GAGE7O76087 117 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 TCRAP04437 139 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 GAGE12FP0CL80 117 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 GAGE12GP0CL81 117 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 GAGE12IP0CL82 117 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 OR5I1Q13606 314 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 ZNF503Q96F45 646 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 TCEAL7Q9BRU2 100 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 TMPRSS5Q9H3S3 457 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 MANBALQ9NQG1 85 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 CYTL1Q9NRR1 136 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 GNG13Q9P2W3 67 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 CELA1Q9UNI1 258 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 PSG8Q9UQ74 426 aa5.78□□□□□ -1.48
USP40-216ENST00000485943 IGHV4-4A0A075B6R2 117 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 TRAV8-1A0A0A6YYK1 113 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 PRSS29PA6NIE9 313 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 PAGE4O60829 102 aa5.77□□□□□ -1.49
USP40-216ENST00000485943 NUDT3O95989 172 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms