RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 Q6ZNX1 250 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 ZNF493Q6ZR52 646 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 KCNRGQ8N5I3 272 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 SCGB1C1Q8TD33 95 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 RAB24Q969Q5 203 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 ST6GAL2Q96JF0 529 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 FAM210BQ96KR6 192 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 C18orf15Q96N68 181 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 VGLL1Q99990 258 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 KLK5Q9Y337 293 aaPredicted RBP4.04□□□□□ -1.76
CUX1-208ENST00000485792 GOLT1BQ9Y3E0 138 aa4.04□□□□□ -1.76
CUX1-208ENST00000485792 IGKV2-40A0A087WW87 121 aaPredicted RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 TRAV10A0A0B4J240 114 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 LOC102723971A0A1B0GUV8 181 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 KRTAP23-1A1A580 65 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 CXorf65A6NEN9 183 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 LYRM9A8MSI8 78 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 DIRC3C9JPN6 131 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 H7BYZ3 331 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 JTBO76095 146 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 IGKV2D-40P01614 121 aaPredicted RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 IGLV2-11P01706 119 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 MBP02144 154 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 OR10J4P0C629 311 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 SPART-AS1P0CW21 52 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 TAS2R45P59539 299 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 DAZ2Q13117 558 aaKnown RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 ERCC8Q13216 396 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 RRN3P1Q2M238 152 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 TDRG1Q3Y452 100 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 ANXA2RQ3ZCQ2 193 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 KHDC3LQ587J8 217 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 FAM222AQ5U5X8 452 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 C11orf72Q8NBR9 251 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 INO80EQ8NBZ0 244 aaPredicted RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 OR10G4Q8NGN3 311 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 OR10G9Q8NGN4 311 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 OR10G7Q8NGN6 311 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 OR10J6PQ8NGY7 276 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 LRRC20Q8TCA0 184 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 C2CD4CQ8TF44 421 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 TMEM263Q8WUH6 116 aaKnown RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 GNPNAT1Q96EK6 184 aaPredicted RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 TVP23CQ96ET8 276 aa4.03□□□□□ -1.76
CUX1-208ENST00000485792 YTHDF2Q9Y5A9 579 aaKnown RBP4.03□□□□□ -1.76
CUX1-208ENST00000485792 HSPG2P98160 4391 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 A0A1B0GVG6 124 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 HBE1P02100 147 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 KRTAP10-2P60368 255 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 Q6AWC8 147 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 COX8CQ7Z4L0 72 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 ZNF575Q86XF7 245 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 CCDC28AQ8IWP9 274 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 TCTE3Q8IZS6 198 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 HSD17B11Q8NBQ5 300 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 Q8TAT8 98 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 RXFP4Q8TDU9 374 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 BLNKQ8WV28 456 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 C16orf74Q96GX8 76 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 PYGO2Q9BRQ0 406 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 NIPSNAP3BQ9BS92 247 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 KRTAP17-1Q9BYP8 105 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 Q9H3A6 140 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 AAMDCQ9H7C9 122 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 OTORQ9NRC9 128 aa4.02□□□□□ -1.77
CUX1-208ENST00000485792 IGHV4-4A0A075B6R2 117 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 FXYD6-FXYD2A0A087WZ82 144 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 DEFB131BA0A096LNP1 70 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 A0A0D9SG52 128 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 CTXND1A0A1B0GTU2 59 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 A0A1W2PRE2 83 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 C7orf71A4D174 169 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 CBY3A6NI87 242 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 PRSS47A8MTI9 375 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 ZNF705GA8MUZ8 300 aaPredicted RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 GGTLC3B5MD39 225 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 HMGB3O15347 200 aaKnown RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 OR7C2O60412 319 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 SEC11BP0C7V7 166 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 ARL14EPLP0DKL9 152 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 GCHFRP30047 84 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 LEPP41159 167 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 CDC34P49427 236 aaPredicted RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 ZNF138P52744 262 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 RANP62826 216 aaKnown RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 UBE2L3P68036 154 aaKnown RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 BTN1A1Q13410 526 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 IBA57Q5T440 356 aaKnown RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 MBD3L1Q8WWY6 194 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 FAM30AQ9NZY2 134 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 KLF12Q9Y4X4 402 aa4.01□□□□□ -1.77
CUX1-208ENST00000485792 TIMM8BQ9Y5J9 83 aaPredicted RBP4.01□□□□□ -1.77
CUX1-208ENST00000485792 IGHV3OR16-12A0A075B7B8 117 aa4□□□□□ -1.77
CUX1-208ENST00000485792 BORCS7-ASMTA0A0B4J1R7 106 aa4□□□□□ -1.77
CUX1-208ENST00000485792 TRAV12-3A0A0B4J271 114 aa4□□□□□ -1.77
CUX1-208ENST00000485792 SERTM2A0A1B0GWG4 89 aa4□□□□□ -1.77
CUX1-208ENST00000485792 A0A1W2PPV4 95 aa4□□□□□ -1.77
CUX1-208ENST00000485792 PGPA6NDG6 321 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 191.7 ms