RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 EBLN2Q6P2I7 272 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 Q6Q795 121 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 DOLPP1Q86YN1 238 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 FAM19A2Q8N3H0 131 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 DEFB119Q8N690 84 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 GATD1Q8NB37 220 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 C20orf203Q8NBC4 194 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 OR1L8Q8NGR8 309 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 NABP2Q9BQ15 211 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 ANAPC13Q9BS18 74 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 MAP1LC3AQ9H492 121 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 ERG28Q9UKR5 140 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 KLF12Q9Y4X4 402 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 MPDZO75970 2070 aa3.75□□□□□ -1.81
USP40-213ENST00000483216 COL5A1P20908 1838 aaPredicted RBP3.74□□□□□ -1.81
USP40-213ENST00000483216 PCDH15Q96QU1 1955 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 CEP192Q8TEP8 1941 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGHV1OR21-1A0A087WYE8 117 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 A0A0G2JRQ6 117 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 KBTBD11-OT1A0A1B0GTJ5 212 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 F8WDY8 70 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 SEC16AO15027 2179 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-39P01597 117 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGHV3-7P01780 117 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGHG4P01861 327 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGKV1D-39P04432 117 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IL4P05112 153 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 ATP5G1P05496 136 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 PLNP26678 52 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 VDAC2P45880 294 aaPredicted RBP3.74□□□□□ -1.81
USP40-213ENST00000483216 SSR4P51571 173 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 ATP5G2Q06055 141 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 TFF3Q07654 80 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 SLAQ13239 276 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 GUSBP1Q15486 140 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 TBC1D28Q2M2D7 210 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 TTC32Q5I0X7 151 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 C10orf113Q5VZT2 155 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 SPATA31B1PQ5VZV4 182 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 MIC13Q5XKP0 118 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 SSX8Q7RTT4 187 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 ATOH7Q8N100 152 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 ORMDL3Q8N138 153 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 OR10X1Q8NGY0 326 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 PPDPFLQ8WWR9 84 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 RAB37Q96AX2 223 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 IGF2BP2-AS1Q96M15 143 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 MGST2Q99735 147 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 GTSF1LQ9H1H1 148 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 NXT2Q9NPJ8 142 aaKnown RBP3.74□□□□□ -1.81
USP40-213ENST00000483216 ZNF355PQ9NSJ1 428 aa3.74□□□□□ -1.81
USP40-213ENST00000483216 ZDBF2Q9HCK1 2354 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 IGKV1-6A0A0C4DH72 117 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 A0A1W2PRD5 423 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 A0A1W2PRF3 423 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 A0A1W2PRM7 423 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 SNCGO76070 127 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 OR2H2O95918 312 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 PPP1R17O96001 155 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 SPINK8P0C7L1 97 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 SCGB1C2P0DMR2 95 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 EVI2AP22794 236 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 PRCDQ00LT1 54 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 ZNF816Q0VGE8 651 aaPredicted RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 HES1Q14469 280 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 RSPO1Q2MKA7 263 aaPredicted RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 KLF17Q5JT82 389 aaPredicted RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 MORN3Q6PF18 240 aaPredicted RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 IGFL3Q6UXB1 125 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 ZNF493Q6ZR52 646 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 IFI27L1Q96BM0 104 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 RNASE7Q9H1E1 156 aaKnown RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 EPDR1Q9UM22 224 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 TSSC4Q9Y5U2 329 aaPredicted RBP3.73□□□□□ -1.81
USP40-213ENST00000483216 RP1P56715 2156 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 MUC6Q6W4X9 2439 aa3.73□□□□□ -1.81
USP40-213ENST00000483216 EML5Q05BV3 1969 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 UNC13CQ8NB66 2214 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 ASXL3Q9C0F0 2248 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 PPIAL4EA0A075B759 164 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 TRAV26-1A0A087WT03 109 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 A0A1B0GUS0 222 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 C5orf49A4QMS7 147 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 ZNF716A6NP11 495 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 DPM2O94777 84 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 LTAP01374 205 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 PPIAL4FP0DN26 164 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 MPV17P39210 176 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 EIF4EBP1Q13541 118 aaPredicted RBP3.72□□□□□ -1.81
USP40-213ENST00000483216 LCN12Q6JVE5 192 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 OR4C13Q8NGP0 309 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 OR10J6PQ8NGY7 276 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 MYOZ3Q8TDC0 251 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 ZNF488Q96MN9 340 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 OTORQ9NRC9 128 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 SPANXB1Q9NS25 103 aaPredicted RBP3.72□□□□□ -1.81
USP40-213ENST00000483216 TMEM14BQ9NUH8 114 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 GNG12Q9UBI6 72 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 KLK12Q9UKR0 248 aa3.72□□□□□ -1.81
USP40-213ENST00000483216 NACAE9PAV3 2078 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms