RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 KLF12Q9Y4X4 402 aa8.4□□□□□ -1.06
SQSTM1-207ENST00000481335 A0A096LPF7 62 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 A6NHS1 94 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 SSNA1O43805 119 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 CDK2AP2O75956 126 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 OR10J4P0C629 311 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 IFITM3Q01628 133 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 ZNF266Q14584 549 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 ESRGQ1W209 222 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 FAM74A1Q5RGS3 127 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 ZNF575Q86XF7 245 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 SCGB1C1Q8TD33 95 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 VSIG2Q96IQ7 327 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 PRO0255Q9UI72 69 aa8.39□□□□□ -1.07
SQSTM1-207ENST00000481335 C16orf90A8MZG2 172 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 RPL12P30050 165 aaKnown RBP8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 FFAR4Q5NUL3 377 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 PRR9Q5T870 116 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 Q6AWC8 147 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 PQLC2Q6ZP29 291 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 TP53TG3Q9ULZ0 132 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 ICOSQ9Y6W8 199 aa8.38□□□□□ -1.07
SQSTM1-207ENST00000481335 DIRC3C9JPN6 131 aa8.37□□□□□ -1.07
SQSTM1-207ENST00000481335 RANP62826 216 aaKnown RBP8.37□□□□□ -1.07
SQSTM1-207ENST00000481335 SPXQ9BT56 116 aa8.37□□□□□ -1.07
SQSTM1-207ENST00000481335 OTORQ9NRC9 128 aa8.37□□□□□ -1.07
SQSTM1-207ENST00000481335 LRP1BQ9NZR2 4599 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 TRGV11A0A075B6L2 103 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 K7EP13 123 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 PAX4O43316 350 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 ACOT6Q3I5F7 207 aaPredicted RBP8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 TDRG1Q3Y452 100 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 IQCF2Q8IXL9 164 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 Q8TAT8 98 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 CMTM2Q8TAZ6 248 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 KRTAP1-5Q9BYS1 174 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 MBD2Q9UBB5 411 aa8.36□□□□□ -1.07
SQSTM1-207ENST00000481335 A0A1W2PPV4 95 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 SIVA1O15304 175 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 CRYBA4P53673 196 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 MRPL23Q16540 153 aaKnown RBP8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 FAM159AQ6UWV7 190 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 OR10G4Q8NGN3 311 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 RASL10AQ92737 203 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 HHLA3Q9XRX5 114 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 HSPG2P98160 4391 aa8.35□□□□□ -1.07
SQSTM1-207ENST00000481335 SERTM2A0A1B0GWG4 89 aa8.34□□□□□ -1.07
SQSTM1-207ENST00000481335 MRPL16Q9NX20 251 aaKnown RBP8.34□□□□□ -1.07
SQSTM1-207ENST00000481335 ORM1P02763 201 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 FHL2Q14192 279 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 NEGR1Q7Z3B1 354 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 OR2G3Q8NGZ4 309 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 SMIM3Q9BZL3 60 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 BATF3Q9NR55 127 aa8.33□□□□□ -1.08
SQSTM1-207ENST00000481335 TRAV4A0A0B4J268 109 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 TRAV21A0A0B4J279 112 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 TRGV4A0A0C4DH28 118 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 PGPA6NDG6 321 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 NXPH4O95158 308 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 LINC00315P59091 139 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 MUC21Q5SSG8 566 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 Q6ZQT7 251 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 SPATA12Q7Z6I5 190 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 NFE4Q86UQ8 179 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 PCNPQ8WW12 178 aaKnown RBP8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 ASB13Q8WXK3 278 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 KCNS1Q96KK3 526 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 PSMG3Q9BT73 122 aaPredicted RBP8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 BOLA1Q9Y3E2 137 aa8.32□□□□□ -1.08
SQSTM1-207ENST00000481335 TRAV9-2A0A087WT02 112 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 C9JCJ5 164 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 M0R2P5 195 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 CIDEAO60543 219 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 IGHV3-53P01767 116 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 MBP02144 154 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 SRIP30626 198 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 SERF2P84101 59 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 TMEM183BQ1AE95 376 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 Q6ZRN7 208 aaPredicted RBP8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 SH2D6Q7Z4S9 175 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 TMEM183AQ8IXX5 376 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 OR10G9Q8NGN4 311 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 OR10G7Q8NGN6 311 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 HYLS1Q96M11 299 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 TXNDC17Q9BRA2 123 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 NDFIP1Q9BT67 221 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 MDFICQ9P1T7 246 aa8.31□□□□□ -1.08
SQSTM1-207ENST00000481335 FBLL1A6NHQ2 334 aaKnown RBP8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 K7EQD1 137 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 K7EQM0 130 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 EREGO14944 169 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 PTTG1O95997 202 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 STAG3L2P0CL84 134 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 STAG3L3P0CL85 134 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 CDC34P49427 236 aaPredicted RBP8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 RAB2AP61019 212 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 CDPF1Q6NVV7 123 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 LYPD5Q6UWN5 251 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 GOLT1AQ6ZVE7 132 aa8.3□□□□□ -1.08
SQSTM1-207ENST00000481335 C5orf17Q8NAS9 161 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms