RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 PSMB8P28062 276 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 GATA4P43694 442 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 LINC01545Q5VT33 79 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 PHF3Q92576 2039 aaKnown RBP7.06□□□□□ -1.28
SYNE1-224ENST00000478916 CR1LQ2VPA4 569 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 CEP250Q9BV73 2442 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 NDUFB8O95169 186 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 MP68P56378 58 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 BRK1Q8WUW1 75 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 CYYR1Q96J86 154 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 SPATA25Q9BR10 227 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 COL4A6Q14031 1691 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 CRYGCP07315 174 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 DEFB130BP0DP73 79 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 DEFB130AP0DP74 79 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 SRSF2Q01130 221 aaKnown RBP7.06□□□□□ -1.28
SYNE1-224ENST00000478916 NDUFS7O75251 213 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 CFHR4Q92496 578 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 DOCK10Q96BY6 2186 aa7.06□□□□□ -1.28
SYNE1-224ENST00000478916 FAM236AA0A1B0GUQ0 79 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 FAM236BA0A1B0GV22 79 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 DEFB125Q8N687 156 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 FAM110DQ8TAY7 271 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-224ENST00000478916 TEX48A0A1B0GUV7 120 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 OVOL3O00110 214 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 SDK2Q58EX2 2172 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 TRAV26-2A0A0B4J265 109 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 A0A0G2JRQ6 117 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 PYGO2Q9BRQ0 406 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 ARFGEF3Q5TH69 2177 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 QRFPP83859 136 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 VWC2Q2TAL6 325 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 PRB1P04280 392 aa7.05□□□□□ -1.28
SYNE1-224ENST00000478916 FUSP35637 526 aaKnown RBP eCLIP7.05□□□□□ -1.28
SYNE1-224ENST00000478916 IGHV3-16A0A0C4DH30 117 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 SH2D6Q7Z4S9 175 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 C20orf78Q9BR46 151 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 MLANAQ16655 118 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 MAPK1IP1LQ8NDC0 245 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 ACACAQ13085 2346 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 H3BQ85 93 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 WIPF3A6NGB9 483 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 PRSS29PA6NIE9 313 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 FOXI2Q6ZQN5 318 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 DKK2Q9UBU2 259 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 APOC4P55056 127 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 TANC1Q9C0D5 1861 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 DEFB131AP59861 70 aa7.04□□□□□ -1.28
SYNE1-224ENST00000478916 MRPL55Q7Z7F7 128 aaKnown RBP7.04□□□□□ -1.28
SYNE1-224ENST00000478916 ATP6V0E1O15342 81 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 Q6ZRM9 215 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 TRBV19A0A075B6N1 114 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 ZNRF2Q8NHG8 242 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 IGHV1OR15-1A0A075B7D0 117 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 K7EMI3 77 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 ETV2O00321 342 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-224ENST00000478916 ZNF493Q6ZR52 646 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 ABCA1O95477 2261 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 C5orf63A6NC05 138 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 SPINK13Q1W4C9 94 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 CACNA1GO43497 2377 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 HERV-K104P63124 156 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 DEFB105AQ8NG35 78 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 TMEM14BQ9NUH8 114 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 KIR2DL5BA0A0G2JN68 375 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 KIR2DL5BA0A0G2JPC4 375 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 PRB2P02812 416 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-224ENST00000478916 KIR2DL5AQ8N109 375 aa7.03□□□□□ -1.28
SYNE1-224ENST00000478916 IGKV3D-7A0A0C4DH55 119 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 PRSS47A8MTI9 375 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 DAD1P61803 113 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 RLFQ13129 1914 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 PAX9P55771 341 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 CFHR3Q02985 330 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 C8orf31Q8N9H6 132 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 TCF20Q9UGU0 1960 aaKnown RBP7.02□□□□□ -1.29
SYNE1-224ENST00000478916 F5H768 121 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 RMI2Q96E14 147 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 C8orf86Q6ZUL3 223 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 MUSTN1Q8IVN3 82 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 PRR25Q96S07 402 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 KLK9Q9UKQ9 250 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 IGLL5B9A064 214 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 IGLC1P0CG04 106 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 C14orf132Q9NPU4 83 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 SPTBN2O15020 2390 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 IGHV3-38A0A0C4DH36 116 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 TMEM14CQ9P0S9 112 aa7.02□□□□□ -1.29
SYNE1-224ENST00000478916 TEN1Q86WV5 123 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 LINC00205P59089 165 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 IGKV1-16P04430 117 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 RHOHQ15669 191 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 MRPL23Q16540 153 aaKnown RBP7.01□□□□□ -1.29
SYNE1-224ENST00000478916 NCOR1O75376 2440 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 C5orf24Q7Z6I8 188 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 CACNA1BQ00975 2339 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 TEX36Q5VZQ5 186 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 Q71RC1 249 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-224ENST00000478916 H0YGX0 51 aa7.01□□□□□ -1.29
SYNE1-224ENST00000478916 SEC61GP60059 68 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms