RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, human

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-DMA-208	ENST00000477541	IGLV2-18	A0A075B6J9	118 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	TRBV25-1	A0A075B6N4	114 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	IGHV4-4	A0A075B6R2	117 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541		K7EMI3	77 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	C1orf122	Q6ZSJ8	110 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	MYOZ3	Q8TDC0	251 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	LRRK2	Q5S007	2527 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	TRAV12-1	A0A0B4J245	112 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541		E9PLD3	99 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	CIDEA	O60543	219 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	IGHG4	P01861	327 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	PRTN3	P24158	256 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	FXYD2	P54710	66 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	ZNF575	Q86XF7	245 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541		Q8N6K4	173 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	SMAD5-AS1	Q9Y6J3	95 aa		10.5	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	CTSG	P08311	255 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	RIPPLY3	P57055	190 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	LAGE3	Q14657	143 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	MINOS1	Q5TGZ0	78 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	TMEM158	Q8WZ71	300 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	FOXC2	Q99958	501 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	MINOS1-NBL1	R4GNA1	71 aa		10.49	□□□□□ -0.73
HLA-DMA-208	ENST00000477541		A0A087WX48	190 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	SLC25A16	P16260	332 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	ZC2HC1B	Q5TFG8	222 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	FOXI2	Q6ZQN5	318 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	DTX2	Q86UW9	622 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	MRAP2	Q96G30	205 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	TIMD4	Q96H15	378 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	C18orf15	Q96N68	181 aa		10.48	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	IGKV2D-26	A0A0A0MRZ7	120 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541		Q8TAT8	98 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	FXYD7	P58549	80 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	HES1	Q14469	280 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	FAM110D	Q8TAY7	271 aa	Predicted RBP	10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	ZNF502	Q8TBZ5	544 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	ATP6V0B	Q99437	205 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	LENEP	Q9Y5L5	61 aa		10.47	□□□□□ -0.73
HLA-DMA-208	ENST00000477541	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		A0A1B0GWB2	263 aa		10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NCBP2L	A6PVI3	153 aa	Known RBP	10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	DLX1	P56177	255 aa		10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	SAMD13	Q5VXD3	122 aa		10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	USP9Y	O00507	2555 aa	Predicted RBP	10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	ABCA1	O95477	2261 aa		10.46	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	IGLL5	B9A064	214 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NDUFS8	O00217	210 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	BUB3	O43684	328 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	GOSR1	O95249	250 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	DYNAP	Q8N1N2	210 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NRAC	Q8N912	160 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	VKORC1	Q9BQB6	163 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NAA38	Q9BRA0	125 aa	Known RBP	10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NHP2	Q9NX24	153 aa	Known RBP	10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	MSRB1	Q9NZV6	116 aa		10.45	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		A0A1W2PRD5	423 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		A0A1W2PRF3	423 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		A0A1W2PRM7	423 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	LINC01549	A6NIU2	74 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		H7C1H1	209 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		K7ENP7	123 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	RPL24	P83731	157 aa	Known RBP	10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	FBXL19-AS1	Q494R0	122 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	ORMDL2	Q53FV1	153 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TMEM78	Q5T7P6	136 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	ZNF479	Q96JC4	524 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	SIGMAR1	Q99720	223 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	ZFAND3	Q9H8U3	227 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	CREBBP	Q92793	2442 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	PRRC2C	Q9Y520	2896 aa	Known RBP	10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TEX48	A0A1B0GUV7	120 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		F8VRH5	84 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	NDP	Q00604	133 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	CD300E	Q496F6	205 aa	Predicted RBP	10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	C9orf47	Q6ZRZ4	202 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	GTSCR1	Q86UQ5	136 aa		10.44	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	BOD1L1	Q8NFC6	3051 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	C12orf74	Q32Q52	190 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	WFDC3	Q8IUB2	231 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	SPATA25	Q9BR10	227 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	C20orf78	Q9BR46	151 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	SPANXB1	Q9NS25	103 aa	Predicted RBP	10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	MRPL35	Q9NZE8	188 aa	Known RBP	10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541		S4R3C0	116 aa		10.43	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	BSN	Q9UPA5	3926 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TRAV40	A0A0B4J280	105 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	IGKV3D-20	A0A0C4DH25	116 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	RRN3P1	Q2M238	152 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TM4SF20	Q53R12	229 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	VMO1	Q7Z5L0	202 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TMEM160	Q9NX00	188 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	DOPEY1	Q5JWR5	2465 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	RELN	P78509	3460 aa		10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TLN1	Q9Y490	2541 aa	Known RBP	10.42	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	TRBV7-3	A0A075B6L6	115 aa		10.41	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	IGHV7-81	A0A0B4J1V7	117 aa		10.41	□□□□□ -0.74
HLA-DMA-208	ENST00000477541	IGHV7-4-1	A0A0J9YVY3	117 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms