RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SIX6O95475 246 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 PRM2P04554 102 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 PRB4P10163 310 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 HTN1P15515 57 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 AZU1P20160 251 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 CEBPGP53567 150 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 DEFA1P59665 94 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 DEFA3P59666 94 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 CYCSP99999 105 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 IFITM3Q01628 133 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 LRRC37A5PQ49AS3 106 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM88Q6PEY1 159 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 UBE2DNLQ8IWF7 75 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 C15orf53Q8NAA6 179 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 THAP6Q8TBB0 222 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 MRPL53Q96EL3 112 aaKnown RBP4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 ODF3Q96PU9 254 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 NPCDR1Q9BY65 106 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 VCX2Q9H322 139 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 KCNIP2Q9NS61 270 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 ZNF586Q9NXT0 402 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM14CQ9P0S9 112 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 TIMM8BQ9Y5J9 83 aaPredicted RBP4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 TRBV19A0A075B6N1 114 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 PRSS29PA6NIE9 313 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 PRAC2D3DTV9 90 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 F8WDY8 70 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 PET100P0DJ07 73 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 DEFB130BP0DP73 79 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 DEFB130AP0DP74 79 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 HIST1H1EP10412 219 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 LEPP41159 167 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 PDE6HQ13956 83 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 CLINT1Q14677 625 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 ZNF493Q6ZR52 646 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 LINC00336Q6ZUF6 198 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 CCDC28AQ8IWP9 274 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 OR5C1Q8NGR4 320 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 RNASE8Q8TDE3 154 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM263Q8WUH6 116 aaKnown RBP4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 MARVELD1Q9BSK0 173 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 PARD6GQ9BYG4 376 aaPredicted RBP4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 OR5AC2Q9NZP5 309 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 TIMM9Q9Y5J7 89 aa4.79□□□□□ -1.64
CCDC88A-213ENST00000476903 CBY3A6NI87 242 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 C17orf112F2Z3M2 114 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 F5H768 121 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 SSNA1O43805 119 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 TNFRSF6BO95407 300 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 ATP5G1P05496 136 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 CT45A10P0DMU9 189 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 PYYP10082 97 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 ATP5G3P48201 142 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 H2BFSP57053 126 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 FCN2Q15485 313 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 LGALS9BQ3B8N2 356 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 RNF212Q495C1 297 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 GCSAMLQ5JQS6 135 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 GFI1BQ5VTD9 330 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 BLNKQ8WV28 456 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 PPP1R1CQ8WVI7 109 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 SLC25A2Q9BXI2 301 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 MRPL32Q9BYC8 188 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 WDR61Q9GZS3 305 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 AAMDCQ9H7C9 122 aa4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 NOP10Q9NPE3 64 aaKnown RBP4.78□□□□□ -1.64
CCDC88A-213ENST00000476903 H0YIZ8 118 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 M0R2N4 97 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 M0R3E3 92 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 NDUFB4O95168 129 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 MPC2O95563 127 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 SLC25A5P05141 298 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 STAG3L2P0CL84 134 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 FAM3BP58499 235 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 MIR17HGQ75NE6 70 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 EXOC3-AS1Q8N2X6 119 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 RPL36ALQ969Q0 106 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 LINC00477Q96M19 166 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 ATP5SQ99766 215 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 PYGO2Q9BRQ0 406 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 ATG101Q9BSB4 218 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 PAXXQ9BUH6 204 aa4.77□□□□□ -1.65
CCDC88A-213ENST00000476903 DNAH10Q8IVF4 4471 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 IGLV2-18A0A075B6J9 118 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 TRAV12-3A0A0B4J271 114 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 C7orf71A4D174 169 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 SNURFLB1AK76 121 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 IFNA5P01569 189 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 NMBP08949 121 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 NBEAP1P0C6P0 100 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 ERCC8Q13216 396 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 TMEM78Q5T7P6 136 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 C9orf47Q6ZRZ4 202 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 SCGB1C1Q8TD33 95 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 FAM167A-AS1Q96KT0 104 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 FAM19A4Q96LR4 140 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 OR51M1Q9H341 326 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 FUT9Q9Y231 359 aa4.76□□□□□ -1.65
CCDC88A-213ENST00000476903 HSPB11Q9Y547 144 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms