RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SRSF1Q07955 248 aaKnown RBP eCLIP3.94□□□□□ -1.78
CCDC39-204ENST00000476379 PSG3Q16557 428 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 VMO1Q7Z5L0 202 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 FAM167A-AS1Q96KT0 104 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 MAP1LC3AQ9H492 121 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 NBEAL2Q6ZNJ1 2754 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 THBDP07204 575 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 YPEL3P61236 119 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 MEF2CQ06413 473 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 FOXE3Q13461 319 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 ZNF56Q15929 161 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 C12orf54Q6X4T0 127 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 Q8N7P7 452 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 BEND2Q8NDZ0 799 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 RNASEH2CQ8TDP1 164 aaKnown RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 CACNG8Q8WXS5 425 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM158Q8WZ71 300 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IFI27L1Q96BM0 104 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IGLC7A0M8Q6 106 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 CRXO43186 299 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 FABP2P12104 132 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM167AQ8TBQ9 72 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 ZNF625Q96I27 306 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 PYGO2Q9BRQ0 406 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 TRAV12-3A0A0B4J271 114 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 MBD3L4A6NDZ8 208 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 MBD3L3A6NE82 208 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 MBD3L5A6NJ08 208 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 FCN3O75636 299 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IGHG3P01860 377 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 KIR3DS1Q14943 382 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 SRSF7Q16629 238 aaKnown RBP eCLIP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 ANXA2RQ3ZCQ2 193 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 LBHQ53QV2 105 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IGFL2Q6UWQ7 119 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 MBD3L2Q8NHZ7 208 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 NCOR1P1Q9H4R4 102 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 COX11Q9Y6N1 276 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 ATP6V0E1O15342 81 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IGF1P05019 195 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 OR10J3Q5JRS4 329 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 SP5Q6BEB4 398 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 IGFL3Q6UXB1 125 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 TEX43Q6ZNM6 134 aa3.93□□□□□ -1.78
CCDC39-204ENST00000476379 C1orf162Q8NEQ5 155 aaPredicted RBP3.93□□□□□ -1.78
CCDC39-204ENST00000476379 TRBV9A0A0B4J1U6 114 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 A0A1B0GWB2 263 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 IGLV1-44P01699 117 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 IGLV2-8P01709 118 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 ATP5J2P56134 94 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SAPCD1Q5SSQ6 148 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 FAM162BQ5T6X4 162 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 ITLN2Q8WWU7 325 aaPredicted RBP3.92□□□□□ -1.78
CCDC39-204ENST00000476379 DDB2Q92466 427 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 FMC1Q96HJ9 113 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 METTL26Q96S19 204 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 TENM1Q9UKZ4 2725 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 KIR2DL5BA0A0G2JN68 375 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 KIR2DL5BA0A0G2JPC4 375 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 A0A1B0GWJ7 208 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 A6NDN8 102 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 LTAP01374 205 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 IGKV1-17P01599 117 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 PRM2P04554 102 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 IGLC1P0CG04 106 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 EGR2P11161 476 aaPredicted RBP3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SAA4P35542 130 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 UBE2V1Q13404 147 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 ETDBQ3ZM63 59 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 BOD1L2Q8IYS8 172 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 KIR2DL5AQ8N109 375 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 OR5AN1Q8NGI8 311 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SIGLEC8Q9NYZ4 499 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 NSD1Q96L73 2696 aaPredicted RBP3.92□□□□□ -1.78
CCDC39-204ENST00000476379 A0A0G2JLM5 398 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 B9A039 149 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 CD7P09564 240 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 Q6ZSR3 168 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SH2D6Q7Z4S9 175 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SVIPQ8NHG7 77 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 RAX2Q96IS3 184 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SCGB3A1Q96QR1 104 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 OTORQ9NRC9 128 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 MRPL16Q9NX20 251 aaKnown RBP3.92□□□□□ -1.78
CCDC39-204ENST00000476379 KLK9Q9UKQ9 250 aa3.92□□□□□ -1.78
CCDC39-204ENST00000476379 SMIM27A0A1W2PRY6 76 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 FAM90A9PA6NNJ1 464 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 J3QW42 95 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 IGHV3-53P01767 116 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 P0C879 139 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 LINC01559Q495D7 138 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 MRPL51Q4U2R6 128 aaKnown RBP3.91□□□□□ -1.78
CCDC39-204ENST00000476379 DYNAPQ8N1N2 210 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 C20orf144Q9BQM9 153 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 CST9LQ9H4G1 147 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 C7orf69Q9H7B7 122 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 IGKV1D-37A0A075B6S9 117 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 IGHV3-16A0A0C4DH30 117 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 OVOL3O00110 214 aa3.91□□□□□ -1.78
CCDC39-204ENST00000476379 HBDP02042 147 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms