RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ZFAND2AQ8N6M9 145 aa13.62□□□□□ -0.23
COL9A3-210ENST00000472880 VGLL1Q99990 258 aa13.62□□□□□ -0.23
COL9A3-210ENST00000472880 SMIM3Q9BZL3 60 aa13.62□□□□□ -0.23
COL9A3-210ENST00000472880 C17orf112F2Z3M2 114 aa13.61□□□□□ -0.23
COL9A3-210ENST00000472880 ST6GAL2Q96JF0 529 aa13.61□□□□□ -0.23
COL9A3-210ENST00000472880 PAXXQ9BUH6 204 aa13.61□□□□□ -0.23
COL9A3-210ENST00000472880 MRPL16Q9NX20 251 aaKnown RBP13.61□□□□□ -0.23
COL9A3-210ENST00000472880 ZNF492Q9P255 531 aa13.61□□□□□ -0.23
COL9A3-210ENST00000472880 ICOSQ9Y6W8 199 aa13.61□□□□□ -0.23
COL9A3-210ENST00000472880 IGHV1OR15-1A0A075B7D0 117 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 PAX4O43316 350 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 OR10J4P0C629 311 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 Q8TAT8 98 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 TP53TG3Q9ULZ0 132 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 LRP1BQ9NZR2 4599 aa13.6□□□□□ -0.23
COL9A3-210ENST00000472880 OR7C2O60412 319 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 IFNA5P01569 189 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 IGHV3-53P01767 116 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 ZNF138P52744 262 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 LINC00315P59091 139 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 ZNF415Q09FC8 603 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 FXYD5Q96DB9 178 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 PHYHIPLQ96FC7 376 aa13.59□□□□□ -0.23
COL9A3-210ENST00000472880 SIVA1O15304 175 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 GIPP09681 153 aaPredicted RBP13.58□□□□□ -0.24
COL9A3-210ENST00000472880 CSN1S1P47710 185 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 SCGB1C1Q8TD33 95 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 ASB13Q8WXK3 278 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 WFDC1Q9HC57 220 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 PRO0255Q9UI72 69 aa13.58□□□□□ -0.24
COL9A3-210ENST00000472880 TRBV7-9A0A0J9YWB2 115 aa13.57□□□□□ -0.24
COL9A3-210ENST00000472880 KRTAP10-2P60368 255 aa13.57□□□□□ -0.24
COL9A3-210ENST00000472880 Q6ZQT7 251 aa13.57□□□□□ -0.24
COL9A3-210ENST00000472880 NXPH4O95158 308 aa13.56□□□□□ -0.24
COL9A3-210ENST00000472880 UBE2L3P68036 154 aaKnown RBP13.56□□□□□ -0.24
COL9A3-210ENST00000472880 SLAQ13239 276 aa13.56□□□□□ -0.24
COL9A3-210ENST00000472880 RBAKDNA6NC62 111 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 RANP62826 216 aaKnown RBP13.55□□□□□ -0.24
COL9A3-210ENST00000472880 Q5BKY6 102 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 FFAR4Q5NUL3 377 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 MUC21Q5SSG8 566 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 LYPD1Q8N2G4 141 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 C8orf49Q96NF6 230 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 AQP10Q96PS8 301 aa13.55□□□□□ -0.24
COL9A3-210ENST00000472880 CRYBA4P53673 196 aa13.54□□□□□ -0.24
COL9A3-210ENST00000472880 ZNF266Q14584 549 aa13.54□□□□□ -0.24
COL9A3-210ENST00000472880 HHLA3Q9XRX5 114 aa13.54□□□□□ -0.24
COL9A3-210ENST00000472880 TRGV4A0A0C4DH28 118 aa13.53□□□□□ -0.24
COL9A3-210ENST00000472880 MRPL23Q16540 153 aaKnown RBP13.53□□□□□ -0.24
COL9A3-210ENST00000472880 KHDC3LQ587J8 217 aa13.53□□□□□ -0.24
COL9A3-210ENST00000472880 Q8N1X5 172 aa13.53□□□□□ -0.24
COL9A3-210ENST00000472880 TAS2R45P59539 299 aa13.52□□□□□ -0.25
COL9A3-210ENST00000472880 FHL2Q14192 279 aa13.52□□□□□ -0.25
COL9A3-210ENST00000472880 Q6ZRN7 208 aaPredicted RBP13.52□□□□□ -0.25
COL9A3-210ENST00000472880 APOBP04114 4563 aaKnown RBP13.51□□□□□ -0.25
COL9A3-210ENST00000472880 TRGV11A0A075B6L2 103 aa13.51□□□□□ -0.25
COL9A3-210ENST00000472880 FAM159AQ6UWV7 190 aa13.51□□□□□ -0.25
COL9A3-210ENST00000472880 NEGR1Q7Z3B1 354 aa13.51□□□□□ -0.25
COL9A3-210ENST00000472880 PCNPQ8WW12 178 aaKnown RBP13.51□□□□□ -0.25
COL9A3-210ENST00000472880 LENEPQ9Y5L5 61 aa13.51□□□□□ -0.25
COL9A3-210ENST00000472880 DIRC3C9JPN6 131 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 EREGO14944 169 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 ERVFC1-1P60608 527 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 TMEM183BQ1AE95 376 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 Q6AWC8 147 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 LYPD5Q6UWN5 251 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 TMEM183AQ8IXX5 376 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 OR2T35Q8NGX2 323 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 SCRT2Q9NQ03 307 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 MDFICQ9P1T7 246 aa13.5□□□□□ -0.25
COL9A3-210ENST00000472880 RNF222A6NCQ9 220 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 SFTA3P0C7M3 94 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 SRIP30626 198 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 ACOT6Q3I5F7 207 aaPredicted RBP13.49□□□□□ -0.25
COL9A3-210ENST00000472880 HYLS1Q96M11 299 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 SPXQ9BT56 116 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 NAGKQ9UJ70 344 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 RPH3ALQ9UNE2 315 aa13.49□□□□□ -0.25
COL9A3-210ENST00000472880 FXYD6-FXYD2A0A087WZ82 144 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 NFE4Q86UQ8 179 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 INO80EQ8NBZ0 244 aaPredicted RBP13.48□□□□□ -0.25
COL9A3-210ENST00000472880 OR10G4Q8NGN3 311 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 CMTM2Q8TAZ6 248 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 TMED6Q8WW62 240 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 ZNF479Q96JC4 524 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 OTORQ9NRC9 128 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 TNFSF18Q9UNG2 199 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 LY96Q9Y6Y9 160 aa13.48□□□□□ -0.25
COL9A3-210ENST00000472880 TRAV9-2A0A087WT02 112 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 G3V3Q6 166 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 K7EQD1 137 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 RAB2AP61019 212 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 FAM74A1Q5RGS3 127 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 IQCF2Q8IXL9 164 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 HSD17B11Q8NBQ5 300 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 RASL10AQ92737 203 aa13.47□□□□□ -0.25
COL9A3-210ENST00000472880 EIF3GO75821 320 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL9A3-210ENST00000472880 ORM1P02763 201 aa13.46□□□□□ -0.25
COL9A3-210ENST00000472880 GYPEP15421 78 aa13.46□□□□□ -0.25
COL9A3-210ENST00000472880 OR2G3Q8NGZ4 309 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms