RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TRAV12-3A0A0B4J271 114 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 GAS8-AS1O95177 125 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 FCER1GP30273 86 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 IGHV3-73A0A0B4J1V6 119 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 INS-IGF2F8WCM5 200 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 BMI1P35226 326 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 NMUP48645 174 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 LOXL1Q08397 574 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 SAPCD1Q5SSQ6 148 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 MBD6Q96DN6 1003 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 C20orf202A1L168 122 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 EBLN2Q6P2I7 272 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 AJUBAQ96IF1 538 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 PHLDA3Q9Y5J5 127 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 ZFHX3Q15911 3703 aa10.59□□□□□ -0.71
CCDC88A-211ENST00000471947 ZNF25P17030 456 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 ZNF843Q8N446 348 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 WI2-2373I1.2A0A1W2PRP0 233 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 IGLV2-11P01706 119 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 RAB9AP51151 201 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 REC114Q7Z4M0 266 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 C14orf178Q8N769 122 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 MAP1LC3CQ9BXW4 147 aa10.58□□□□□ -0.72
CCDC88A-211ENST00000471947 LOC102724200A0A096LPH7 203 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 M0R143 59 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 TCAPO15273 167 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 C21orf62-AS1Q17RA5 79 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 UBR5O95071 2799 aaPredicted RBP10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 NBEAL2Q6ZNJ1 2754 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 CBY3A6NI87 242 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 A8MWP6 167 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 PRM2P04554 102 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 MYCNOSP40205 109 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 WFDC11Q8NEX6 87 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 GNRH2O43555 120 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 NAA38Q9BRA0 125 aaKnown RBP10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 TMEM70Q9BUB7 260 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 KLK9Q9UKQ9 250 aa10.57□□□□□ -0.72
CCDC88A-211ENST00000471947 A0A087WWL8 130 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 S100A7P31151 101 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 C18orf65Q6ZTR6 163 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 LINC01356Q8N9X3 169 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 MLST8Q9BVC4 326 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 YAE1D1Q9NRH1 226 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 PLP1P60201 277 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 COX19Q49B96 90 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 TMEM14CQ9P0S9 112 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 PAX2Q02962 417 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 Q8N6K4 173 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 APCP25054 2843 aa10.56□□□□□ -0.72
CCDC88A-211ENST00000471947 NPYP01303 97 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 EMP1P54849 157 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 CACNG7P62955 275 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 STPG4Q8N801 248 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 ZMAT5Q9UDW3 170 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 UNC79Q9P2D8 2635 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 C7orf71A4D174 169 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 CD7P09564 240 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 TMEM208Q9BTX3 173 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 TRBV7-1A0A0A6YYK4 115 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 IGHV1-24A0A0C4DH33 117 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 SPINK13Q1W4C9 94 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 FAM231DQ6ZW35 169 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 ORMDL3Q8N138 153 aa10.55□□□□□ -0.72
CCDC88A-211ENST00000471947 NDUFAF3Q9BU61 184 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 SNHG12Q9BXW3 62 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 KLF12Q9Y4X4 402 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 F8P00451 2351 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 TRAV9-1A0A075B6T8 112 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 KNCNA6PVL3 124 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 ZNF124Q15973 351 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 OR10J3Q5JRS4 329 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 PIFOQ8TCI5 191 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 C19orf71A6NCJ1 209 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 Q0VG73 95 aa10.54□□□□□ -0.72
CCDC88A-211ENST00000471947 SMIM17P0DL12 118 aa10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 MRPL51Q4U2R6 128 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 COA6Q5JTJ3 125 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 DYNLRB2Q8TF09 96 aa10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 C20orf173Q96LM9 149 aa10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 SRSF8Q9BRL6 282 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 SLURP1P55000 103 aa10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 PEF1Q9UBV8 284 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 TMEM191AQ9H0A3 160 aa10.53□□□□□ -0.72
CCDC88A-211ENST00000471947 A0A0G2JLM5 398 aa10.52□□□□□ -0.73
CCDC88A-211ENST00000471947 LEPP41159 167 aa10.52□□□□□ -0.73
CCDC88A-211ENST00000471947 JPT2Q9H910 190 aa10.52□□□□□ -0.73
CCDC88A-211ENST00000471947 ZNF256Q9Y2P7 627 aaPredicted RBP10.52□□□□□ -0.73
CCDC88A-211ENST00000471947 TTTY13Q9BZ97 58 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 ZFAND3Q9H8U3 227 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 TMEM160Q9NX00 188 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 C1orf194Q5T5A4 169 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 FAM159AQ6UWV7 190 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 C11orf21Q9P2W6 132 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 IGLL1P15814 213 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 ANXA2RQ3ZCQ2 193 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 KLHDC1Q8N7A1 406 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 RAB37Q96AX2 223 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 SLC50A1Q9BRV3 221 aa10.51□□□□□ -0.73
CCDC88A-211ENST00000471947 PRSS22Q9GZN4 317 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms