RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 SPRY2O43597 315 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 TMEM183BQ1AE95 376 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 C11orf52Q96A22 123 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 RNF183Q96D59 192 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 NIPSNAP3BQ9BS92 247 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 TREM1Q9NP99 234 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 MED9Q9NWA0 146 aa12.7□□□□□ -0.38
CPSF4-209ENST00000465132 SMIM9A6NGZ8 99 aa12.69□□□□□ -0.38
CPSF4-209ENST00000465132 TAS2R60P59551 318 aa12.69□□□□□ -0.38
CPSF4-209ENST00000465132 TOR2AQ5JU69 321 aa12.69□□□□□ -0.38
CPSF4-209ENST00000465132 PRNTQ86SH4 94 aa12.69□□□□□ -0.38
CPSF4-209ENST00000465132 FAM19A4Q96LR4 140 aa12.69□□□□□ -0.38
CPSF4-209ENST00000465132 M0R2Z0 102 aa12.68□□□□□ -0.38
CPSF4-209ENST00000465132 IFITM2Q01629 132 aa12.68□□□□□ -0.38
CPSF4-209ENST00000465132 DEFB135Q30KP9 77 aa12.68□□□□□ -0.38
CPSF4-209ENST00000465132 BIN3Q9NQY0 253 aa12.68□□□□□ -0.38
CPSF4-209ENST00000465132 SCO2A0A1W2PP80 73 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 C7orf71A4D174 169 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 CXorf65A6NEN9 183 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 KLLNB2CW77 178 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 H7BYZ3 331 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 RGS13O14921 159 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 FXYD7P58549 80 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 SMUG1Q53HV7 270 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 C2CD4CQ8TF44 421 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 SMIM12Q96EX1 92 aa12.67□□□□□ -0.38
CPSF4-209ENST00000465132 TRAV8-1A0A0A6YYK1 113 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 A0A0J9YWU9 116 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 LY6G6CO95867 125 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 RNASE4P34096 147 aaKnown RBP12.66□□□□□ -0.38
CPSF4-209ENST00000465132 Q86TA4 180 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 Q8TAT8 98 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 NEU1Q99519 415 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 RARRES2Q99969 163 aa12.66□□□□□ -0.38
CPSF4-209ENST00000465132 TRAV21A0A0B4J279 112 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 RAB19A4D1S5 217 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 NUPR2A6NF83 97 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 IGLV2-11P01706 119 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 GIG44P09565 113 aaPredicted RBP12.65□□□□□ -0.38
CPSF4-209ENST00000465132 MIFP14174 115 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 RPL35P42766 123 aaKnown RBP12.65□□□□□ -0.38
CPSF4-209ENST00000465132 GFI1BQ5VTD9 330 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 CSNK1G2-AS1Q8NCQ2 148 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 LINC01587Q99440 93 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 PYGO2Q9BRQ0 406 aa12.65□□□□□ -0.38
CPSF4-209ENST00000465132 TRAV12-2A0A075B6T6 113 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 TRAV34A0A0B4J273 112 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 LTAP01374 205 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 GNG4P50150 75 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 ZNF705AQ6ZN79 300 aaPredicted RBP12.64□□□□□ -0.39
CPSF4-209ENST00000465132 BAGE2Q86Y30 109 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 ZFAND2AQ8N6M9 145 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 OR11H2Q8NH07 326 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 PCNPQ8WW12 178 aaKnown RBP12.64□□□□□ -0.39
CPSF4-209ENST00000465132 LINC00479Q96M42 142 aa12.64□□□□□ -0.39
CPSF4-209ENST00000465132 TRAV12-3A0A0B4J271 114 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 TMEM189A5PLL7 270 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 J3KRW8 73 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 CRXO43186 299 aaPredicted RBP12.63□□□□□ -0.39
CPSF4-209ENST00000465132 FAM74A3Q4VXF1 159 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 Q6AWC8 147 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 CEMP1Q6PRD7 247 aaPredicted RBP12.63□□□□□ -0.39
CPSF4-209ENST00000465132 TMEM183AQ8IXX5 376 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 SGK494Q96LW2 274 aa12.63□□□□□ -0.39
CPSF4-209ENST00000465132 IGHV3OR16-12A0A075B7B8 117 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 FABP5P3A8MUU1 101 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 PFN1P07737 140 aaKnown RBP12.62□□□□□ -0.39
CPSF4-209ENST00000465132 PRB4P10163 310 aaPredicted RBP12.62□□□□□ -0.39
CPSF4-209ENST00000465132 RRN3P1Q2M238 152 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 ZNF493Q6ZR52 646 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 COX8CQ7Z4L0 72 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 KCNS1Q96KK3 526 aa12.62□□□□□ -0.39
CPSF4-209ENST00000465132 C9JCJ5 164 aa12.61□□□□□ -0.39
CPSF4-209ENST00000465132 GCGP01275 180 aa12.61□□□□□ -0.39
CPSF4-209ENST00000465132 UQCC3Q6UW78 93 aa12.61□□□□□ -0.39
CPSF4-209ENST00000465132 FAM159AQ6UWV7 190 aa12.61□□□□□ -0.39
CPSF4-209ENST00000465132 LINC00467Q9BRT7 94 aa12.61□□□□□ -0.39
CPSF4-209ENST00000465132 CEBPGP53567 150 aa12.6□□□□□ -0.39
CPSF4-209ENST00000465132 BTN1A1Q13410 526 aa12.6□□□□□ -0.39
CPSF4-209ENST00000465132 FAM162BQ5T6X4 162 aa12.6□□□□□ -0.39
CPSF4-209ENST00000465132 C1orf158Q8N1D5 194 aa12.6□□□□□ -0.39
CPSF4-209ENST00000465132 TEX48A0A1B0GUV7 120 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 ZNF324O75467 553 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-209ENST00000465132 SRP19P09132 144 aaKnown RBP12.59□□□□□ -0.39
CPSF4-209ENST00000465132 ZNF674Q2M3X9 581 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 CENPWQ5EE01 88 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 EIF4E3Q8N5X7 224 aaKnown RBP12.59□□□□□ -0.39
CPSF4-209ENST00000465132 DAZAP1Q96EP5 407 aaKnown RBP12.59□□□□□ -0.39
CPSF4-209ENST00000465132 C16orf74Q96GX8 76 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 SMIM7Q9BQ49 75 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 PARLQ9H300 379 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 KLK5Q9Y337 293 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-209ENST00000465132 LY96Q9Y6Y9 160 aa12.59□□□□□ -0.39
CPSF4-209ENST00000465132 IGHV1OR15-1A0A075B7D0 117 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 CBY3A6NI87 242 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 ZNF727A8MUV8 499 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 SOHLH1Q5JUK2 328 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 TVP23CQ96ET8 276 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 C8orf49Q96NF6 230 aa12.58□□□□□ -0.4
CPSF4-209ENST00000465132 KMT2AQ03164 3969 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms