RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 COL5A1P20908 1838 aaPredicted RBP1.88□□□□□ -2.11
USH2A-203ENST00000463147 COL24A1Q17RW2 1714 aa1.88□□□□□ -2.11
USH2A-203ENST00000463147 KIAA1551Q9HCM1 1747 aa1.88□□□□□ -2.11
USH2A-203ENST00000463147 NUP210LQ5VU65 1888 aa1.88□□□□□ -2.11
USH2A-203ENST00000463147 CCDC88CQ9P219 2028 aa1.88□□□□□ -2.11
USH2A-203ENST00000463147 PAPPAQ13219 1627 aa1.88□□□□□ -2.11
USH2A-203ENST00000463147 MPDZO75970 2070 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 A0A087WWC5 75 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 IGKV1-9A0A0C4DH69 117 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 A0A0D9SEW6 157 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 MAP1LC3B2A6NCE7 125 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 UMAD1C9J7I0 102 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 GABARAPH6UMI1 98 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 CCL25O15444 150 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 HIST1H2BKO60814 126 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 PGLYRP1O75594 196 aaPredicted RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 NDUFB6O95139 128 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TNFSF15O95150 251 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 APOA2P02652 100 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 CSN2P05814 226 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 HIST1H2BJP06899 126 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 CD14P08571 375 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TRGC1P0CF51 173 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 PSMB8P28062 276 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 POLR2HP52434 150 aaKnown RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 KRTAP6-3Q3LI67 103 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 LINC01554Q52M75 96 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 OCIAD2Q56VL3 154 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 NUP188Q5SRE5 1749 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 SMIM5Q71RC9 77 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TRAPPC6BQ86SZ2 158 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 RPP25LQ8N5L8 163 aaKnown RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 ANKRD31Q8N7Z5 1873 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 OR5D16Q8NGK9 328 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 PFN4Q8NHR9 129 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 WFDC5Q8TCV5 224 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 DOT1LQ8TEK3 1739 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 SMIM4Q8WVI0 70 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 C11orf40Q8WZ69 217 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 ADAT3Q96EY9 351 aaPredicted RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 LYSMD1Q96S90 227 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TIMM21Q9BVV7 248 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 DPY30Q9C005 99 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 MAP1LC3BQ9GZQ8 125 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 CHST6Q9GZX3 395 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TCEAL2Q9H3H9 227 aaPredicted RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 CST9LQ9H4G1 147 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 FKBP11Q9NYL4 201 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 TAS2R8Q9NYW2 309 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 SMPXQ9UHP9 88 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 SIPA1L3O60292 1781 aaPredicted RBP1.87□□□□□ -2.11
USH2A-203ENST00000463147 NUMA1Q14980 2115 aa1.87□□□□□ -2.11
USH2A-203ENST00000463147 CITO14578 2027 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 RGPD3A6NKT7 1758 aaPredicted RBP1.86□□□□□ -2.11
USH2A-203ENST00000463147 LTN1O94822 1766 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 RGPD4Q7Z3J3 1758 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 UBR2Q8IWV8 1755 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 TRBV19A0A075B6N1 114 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 IGHV3-64A0A075B6Q5 118 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 TRAV14DV4A0A0A6YYC5 116 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 ARRDC5A6NEK1 342 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 RIIAD1A6NNX1 92 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 OR1I1O60431 355 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 C1QCP02747 245 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 TRGC2P03986 189 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 AKAIN1P0CW23 69 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 S100A3P33764 101 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 SMIM11AP58511 58 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 S100A10P60903 97 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 CKS1BP61024 79 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 MORN2Q502X0 79 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 C12orf73Q69YU5 71 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 SLC25A26Q70HW3 274 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 RPS27LQ71UM5 84 aaKnown RBP1.86□□□□□ -2.11
USH2A-203ENST00000463147 OR4X2Q8NGF9 303 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 STAG3L4Q8TBR4 150 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 MBD3L1Q8WWY6 194 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 TMEM106AQ96A25 262 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 MUCL1Q96DR8 90 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 S100A16Q96FQ6 103 aaKnown RBP1.86□□□□□ -2.11
USH2A-203ENST00000463147 DNAJC30Q96LL9 226 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 C2orf50Q96LR7 162 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 CIB3Q96Q77 187 aaPredicted RBP1.86□□□□□ -2.11
USH2A-203ENST00000463147 SCGB3A1Q96QR1 104 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 DOHHQ9BU89 302 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 VAMP8Q9BV40 100 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 SNRNP25Q9BV90 132 aaKnown RBP1.86□□□□□ -2.11
USH2A-203ENST00000463147 SLC35B3Q9H1N7 401 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 SH3BGRL3Q9H299 93 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 CXCL16Q9H2A7 254 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 POPDC3Q9HBV1 291 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 BET1LQ9NYM9 111 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 OR5AC2Q9NZP5 309 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 MICAL3Q7RTP6 2002 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 QSER1Q2KHR3 1735 aa1.86□□□□□ -2.11
USH2A-203ENST00000463147 TECPR2O15040 1411 aa1.85□□□□□ -2.11
USH2A-203ENST00000463147 FOCADQ5VW36 1801 aa1.85□□□□□ -2.11
USH2A-203ENST00000463147 ARL5CA6NH57 179 aa1.85□□□□□ -2.11
USH2A-203ENST00000463147 ZNF860A6NHJ4 632 aa1.85□□□□□ -2.11
USH2A-203ENST00000463147 A6NIN4 97 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms