RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DNAJC9-AS1A6NH13 148 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 SMKR1H3BMG3 65 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 MORN5Q5VZ52 161 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 ZC2HC1AQ96GY0 325 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 FANCD2OSQ96PS1 177 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 ARHGAP32A7KAX9 2087 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 IGKV1OR2-108A0A075B7D4 117 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 J3QR89 54 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 TMEM86BQ8N661 226 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 CFHR4Q92496 578 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 IFI27L1Q96BM0 104 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 H7C2G1 150 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 VCYO14598 125 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 LINC00518Q8N0U6 118 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 IGKV3D-20A0A0C4DH25 116 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 BUB3O43684 328 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 APOC4P55056 127 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 PLP1P60201 277 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 FOXI2Q6ZQN5 318 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 FAM231DQ6ZW35 169 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 CSTL1Q9H114 145 aa5.76□□□□□ -1.49
SYNE1-213ENST00000448038 ADARB2-AS1A8MUL3 147 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 GP9P14770 177 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 C14orf144Q96I85 54 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 AGPAT4-IT1Q9H0P7 198 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 TMEM89A2RUT3 159 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 LINC01548A6NM66 108 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 PRSS46E5RG02 174 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 LYPD6BQ8NI32 183 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 A0A087WX48 190 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 DPH3Q96FX2 82 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 MRAP2Q96G30 205 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 V9GYV3 84 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 PLXNB1O43157 2135 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 CPAMD8Q8IZJ3 1885 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 CLPSL1A2RUU4 121 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 SNAI2O43623 268 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 CD5LO43866 347 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 DDTP30046 118 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 CFHR3Q02985 330 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 EIF4EBP1Q13541 118 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-213ENST00000448038 ASPHD1Q5U4P2 390 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 C16orf54Q6UWD8 224 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 MRPL53Q96EL3 112 aaKnown RBP5.75□□□□□ -1.49
SYNE1-213ENST00000448038 ABCA2Q9BZC7 2435 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 WI2-2373I1.2A0A1W2PRP0 233 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 LINC01549A6NIU2 74 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 LY6LH3BQJ8 138 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 JOSD1Q15040 202 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-213ENST00000448038 Q6YL49 198 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 OR2K2Q8NGT1 345 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 COPS9Q8WXC6 57 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 SPAG8Q99932 426 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-213ENST00000448038 WNK1Q9H4A3 2382 aa5.75□□□□□ -1.49
SYNE1-213ENST00000448038 TMEM256Q8N2U0 113 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 PHLDA1Q8WV24 401 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-213ENST00000448038 HIST1H2BLQ99880 126 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 LOC102724200A0A096LPH7 203 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-213ENST00000448038 DPM2O94777 84 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 LTAP01374 205 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 CRPP02741 224 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 COL5A1-AS1Q5SY13 56 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 C9orf66Q5T8R8 295 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 PET117Q6UWS5 81 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 C11orf1Q9H5F2 150 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 PLA2G2EQ9NZK7 142 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 RHODO00212 210 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 MALP21145 153 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 GPHB5Q86YW7 130 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 CITED2Q99967 270 aaPredicted RBP5.74□□□□□ -1.49
SYNE1-213ENST00000448038 CHTOPQ9Y3Y2 248 aaKnown RBP5.74□□□□□ -1.49
SYNE1-213ENST00000448038 C2orf70A6NJV1 201 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 GTF2H5Q6ZYL4 71 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 ERASQ7Z444 233 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 HIST3H2BBQ8N257 126 aa5.74□□□□□ -1.49
SYNE1-213ENST00000448038 IGHV3-16A0A0C4DH30 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 TRBV12-3P01733 135 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 AZU1P20160 251 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 DAD1P61803 113 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 RNF151Q2KHN1 245 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 APRG1Q8IVJ8 170 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 DMRT1Q9Y5R6 373 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE12BA1L429 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 K7EMT4 169 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 UBE2CO00762 179 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE7O76087 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 TNFRSF6BO95407 300 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE12FP0CL80 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE12GP0CL81 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 GAGE12IP0CL82 117 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 CFAP161Q6P656 301 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 FAM167A-AS1Q96KT0 104 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 RANBP2P49792 3224 aaKnown RBP5.73□□□□□ -1.49
SYNE1-213ENST00000448038 RBAKDNA6NC62 111 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 FAM104BQ5XKR9 115 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 LAMTOR2Q9Y2Q5 125 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 EBI3Q14213 229 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 C10orf91Q5T1B1 145 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 C4orf3Q8WVX3 66 aa5.73□□□□□ -1.49
SYNE1-213ENST00000448038 LOC107984156A0A0G2JMH3 177 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 139.4 ms