RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 KIR2DL4Q99706 377 aa15.02□□□□□ -0.01
HMGA1-205ENST00000447654 PLGLAQ15195 96 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 CNFNQ9BYD5 112 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 TRBV19A0A075B6N1 114 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 SMKR1H3BMG3 65 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 H3BTX0 84 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 TNFRSF6BO95407 300 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 LY6DQ14210 128 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 ZNF833PQ6ZTB9 187 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 RNF185Q96GF1 192 aa15.01□□□□□ -0.01
HMGA1-205ENST00000447654 MBNL2Q5VZF2 373 aaKnown RBP15□□□□□ -0.01
HMGA1-205ENST00000447654 A0A1W2PPI3 338 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 CGB1A6NKQ9 187 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 H7C1H1 209 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 TCL1BO95988 128 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 FAM159AQ6UWV7 190 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 ZFP2Q6ZN57 461 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 SCNM1Q9BWG6 230 aa15□□□□□ -0.01
HMGA1-205ENST00000447654 TRAV4A0A0B4J268 109 aa14.99□□□□□ -0.01
HMGA1-205ENST00000447654 LGALS1P09382 135 aaKnown RBP14.99□□□□□ -0.01
HMGA1-205ENST00000447654 IGLC6P0CF74 106 aa14.99□□□□□ -0.01
HMGA1-205ENST00000447654 C5orf47Q569G3 176 aa14.99□□□□□ -0.01
HMGA1-205ENST00000447654 UTF1Q5T230 341 aa14.99□□□□□ -0.01
HMGA1-205ENST00000447654 Q71RC1 249 aaPredicted RBP14.99□□□□□ -0.01
HMGA1-205ENST00000447654 F8VRH5 84 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 MEIG1Q5JSS6 88 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 NRGNQ92686 78 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 IGLV2-18A0A075B6J9 118 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 E7EUB6 86 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 M0R1B8 84 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 SH2D1AO60880 128 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 CD7P09564 240 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 SIGLEC15Q6ZMC9 328 aa14.98□□□□□ -0.01
HMGA1-205ENST00000447654 TMEM78Q5T7P6 136 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 RASL10AQ92737 203 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 TRAV8-2A0A0B4J237 113 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 FAM27E3Q08E93 113 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 SPANXDQ9BXN6 97 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 NGBQ9NPG2 151 aa14.97□□□□□ -0.01
HMGA1-205ENST00000447654 RPUSD1Q9UJJ7 312 aaKnown RBP14.97□□□□□ -0.01
HMGA1-205ENST00000447654 NDUFA11Q86Y39 141 aa14.96□□□□□ -0.01
HMGA1-205ENST00000447654 IGF2RP11717 2491 aa14.96□□□□□ -0.02
HMGA1-205ENST00000447654 PTPRQQ9UMZ3 2332 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 IGHV3-48P01763 117 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 LAGE3Q14657 143 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 ANXA2RQ3ZCQ2 193 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 ZNRF1Q8ND25 227 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 SLC25A20O43772 301 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 ID1P41134 155 aa14.95□□□□□ -0.02
HMGA1-205ENST00000447654 SRSF8Q9BRL6 282 aaKnown RBP14.95□□□□□ -0.02
HMGA1-205ENST00000447654 CD40P25942 277 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 AAMDCQ9H7C9 122 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 IGHV3OR15-7A0A075B7D8 119 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 PDE6HQ13956 83 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 DNAJC30Q96LL9 226 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 C8orf49Q96NF6 230 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 RAXQ9Y2V3 346 aa14.94□□□□□ -0.02
HMGA1-205ENST00000447654 DSCAMO60469 2012 aa14.93□□□□□ -0.02
HMGA1-205ENST00000447654 RPL13AP40429 203 aaKnown RBP14.93□□□□□ -0.02
HMGA1-205ENST00000447654 FAM201AQ5SY85 155 aa14.93□□□□□ -0.02
HMGA1-205ENST00000447654 DSCAML1Q8TD84 2053 aa14.93□□□□□ -0.02
HMGA1-205ENST00000447654 LINC01548A6NM66 108 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 H3BVH4 76 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 NDUFA3O95167 84 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 Q8NA96 180 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 FAM57AQ8TBR7 257 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 SHANK2-AS3Q9BTD1 123 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 CRLF1O75462 422 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 LYZP61626 148 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 SRSF9Q13242 221 aaKnown RBP eCLIP14.92□□□□□ -0.02
HMGA1-205ENST00000447654 C10orf126Q8N4M7 172 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 SPANXCQ9NY87 97 aa14.92□□□□□ -0.02
HMGA1-205ENST00000447654 MRPL20Q9BYC9 149 aaKnown RBP14.91□□□□□ -0.02
HMGA1-205ENST00000447654 PPDPFQ9H3Y8 114 aa14.91□□□□□ -0.02
HMGA1-205ENST00000447654 TMSB15BA0A087X1C1 80 aa14.91□□□□□ -0.02
HMGA1-205ENST00000447654 SPRY3O43610 288 aa14.91□□□□□ -0.02
HMGA1-205ENST00000447654 HLA-DMBP28068 263 aa14.91□□□□□ -0.02
HMGA1-205ENST00000447654 VMA21Q3ZAQ7 101 aa14.91□□□□□ -0.02
HMGA1-205ENST00000447654 PKDREJQ9NTG1 2253 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 WIPF1O43516 503 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 LHBP01229 141 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 FOXC1Q12948 553 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 CSDC2Q9Y534 153 aaKnown RBP14.9□□□□□ -0.02
HMGA1-205ENST00000447654 SPTA1P02549 2419 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 H3BRN7 92 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 GLRXP35754 106 aa14.9□□□□□ -0.02
HMGA1-205ENST00000447654 A0A0G2JNJ9 132 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 IGLV2-23P01705 113 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 SLC25A16P16260 332 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 C10orf55Q5SWW7 151 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 DUX4L9Q6RFH8 374 aaPredicted RBP14.89□□□□□ -0.03
HMGA1-205ENST00000447654 ODF3Q96PU9 254 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 Q9UFV3 132 aa14.89□□□□□ -0.03
HMGA1-205ENST00000447654 TRAV8-4A0A0B4J246 113 aa14.88□□□□□ -0.03
HMGA1-205ENST00000447654 ZNF815PA8K554 130 aa14.88□□□□□ -0.03
HMGA1-205ENST00000447654 EGR2P11161 476 aaPredicted RBP14.88□□□□□ -0.03
HMGA1-205ENST00000447654 SCGB1D4Q6XE38 83 aa14.88□□□□□ -0.03
HMGA1-205ENST00000447654 IGLV3-9A0A075B6K5 115 aa14.88□□□□□ -0.03
HMGA1-205ENST00000447654 COX6B1P14854 86 aa14.88□□□□□ -0.03
HMGA1-205ENST00000447654 RUSC1-AS1Q66K80 236 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms