RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZFP2Q6ZN57 461 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 OPRPNQ99935 248 aaPredicted RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 DEPPQ9NTK1 212 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 MGAMO43451 1857 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 COL11A2P13942 1736 aaPredicted RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 ITLN2Q8WWU7 325 aaPredicted RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 CEACAM8P31997 349 aaPredicted RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 NTF4P34130 210 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 UBE2AP49459 152 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 RNF114Q9Y508 228 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 Q6P435 159 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 LCNL1Q6ZST4 164 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 MRPL35Q9NZE8 188 aaKnown RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 NDUFA4O00483 81 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 IGKV3-15P01624 115 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 SLC22A18ASQ8N1D0 253 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 ANXA2RQ3ZCQ2 193 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 MRPL51Q4U2R6 128 aaKnown RBP5.8□□□□□ -1.48
VPS53-204ENST00000437048 SCRT1Q9BWW7 348 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 A0A1B0GX51 115 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 NDUFV3P56181 108 aaKnown RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 PLAURQ03405 335 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 IGHV1-3A0A0C4DH29 117 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 CTSBP07858 339 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 SCRT2Q9NQ03 307 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 FAM110DQ8TAY7 271 aaPredicted RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 NBL1P41271 181 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 ZNF134P52741 427 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 BSPH1Q075Z2 132 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 TCF15Q12870 199 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 IGLL5B9A064 214 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 ZNF561-AS1K7EIQ3 104 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 VMO1Q7Z5L0 202 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 K7ERS5 55 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 C5orf24Q7Z6I8 188 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 ZNF784Q8NCA9 323 aaPredicted RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 BUB1B-PAK6H3BSN5 160 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 CD55P08174 381 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 DAZ2Q13117 558 aaKnown RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 DAZ4Q86SG3 579 aaKnown RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 DAZ3Q9NR90 486 aaKnown RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 TRAV26-1A0A087WT03 109 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 ARMS2P0C7Q2 107 aa5.79□□□□□ -1.48
VPS53-204ENST00000437048 NAA38Q9BRA0 125 aaKnown RBP5.79□□□□□ -1.48
VPS53-204ENST00000437048 E9PLD3 99 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 SUMO4Q6EEV6 95 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 IGHV1-69P01742 117 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 ZNF833PQ6ZTB9 187 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 C1orf159Q96HA4 380 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 KAAG1Q9UBP8 84 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 FAM236AA0A1B0GUQ0 79 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 FAM236BA0A1B0GV22 79 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 PNRC2Q9NPJ4 139 aaKnown RBP5.78□□□□□ -1.48
VPS53-204ENST00000437048 BAALC-AS2P0C853 105 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 HAMPP81172 84 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 LRRC75A-AS1Q8N1F1 130 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 SLC25A45Q8N413 288 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 IGHV3-72A0A0B4J1Y9 119 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 CFHR4Q92496 578 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 C16orf54Q6UWD8 224 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 H3BTX0 84 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 EXOC3-AS1Q8N2X6 119 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 CR1LQ2VPA4 569 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 SVIPQ8NHG7 77 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 DPH3Q96FX2 82 aa5.78□□□□□ -1.48
VPS53-204ENST00000437048 MUC6Q6W4X9 2439 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 TGFAP01135 160 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 FOXC1Q12948 553 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 FAM216BQ8N7L0 139 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 TM2D2Q9BX73 214 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 SETD2Q9BYW2 2564 aaPredicted RBP5.77□□□□□ -1.49
VPS53-204ENST00000437048 LINC00479Q96M42 142 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 EFNA4P52798 201 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 A0A1W2PR77 199 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 NDUFS7O75251 213 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 ANKRD39Q53RE8 183 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 BRK1Q8WUW1 75 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 C11orf86A6NJI1 115 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 H3BRN7 92 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 EIF4EBP1Q13541 118 aaPredicted RBP5.77□□□□□ -1.49
VPS53-204ENST00000437048 C14orf178Q8N769 122 aaPredicted RBP5.77□□□□□ -1.49
VPS53-204ENST00000437048 J3QLI3 93 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 DAND5Q8N907 189 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 TMEM178BH3BS89 294 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 Q6ZUT4 128 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 LRRK2Q5S007 2527 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 IGHV1OR15-1A0A075B7D0 117 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 C4orf51C9J302 202 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 LYZL4Q96KX0 146 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 VSIRQ9H7M9 311 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 ICOSQ9Y6W8 199 aa5.77□□□□□ -1.49
VPS53-204ENST00000437048 H7C423 109 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 IGHV3-48P01763 117 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 IGHV1-2P23083 117 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 IGHV3OR16-12A0A075B7B8 117 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 TMEM89A2RUT3 159 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 B4DSR2 109 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 CTRLP40313 264 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 PRR20EP86478 221 aa5.76□□□□□ -1.49
VPS53-204ENST00000437048 PRR20CP86479 221 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms