RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 ASCL2Q99929 193 aa8.99□□□□□ -0.97
LINC00339-204ENST00000434233 MLST8Q9BVC4 326 aa8.99□□□□□ -0.97
LINC00339-204ENST00000434233 TRAV12-2A0A075B6T6 113 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 C7orf71A4D174 169 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 ZNF324O75467 553 aaPredicted RBP8.98□□□□□ -0.97
LINC00339-204ENST00000434233 IGLV2-8P01709 118 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 RNASE4P34096 147 aaKnown RBP8.98□□□□□ -0.97
LINC00339-204ENST00000434233 GNG4P50150 75 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 CEBPGP53567 150 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 KIR3DS1Q14943 382 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 ZNF674Q2M3X9 581 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 LINC01559Q495D7 138 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 GFI1BQ5VTD9 330 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 Q6AWC8 147 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 SBSPONQ8IVN8 264 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 LY96Q9Y6Y9 160 aa8.98□□□□□ -0.97
LINC00339-204ENST00000434233 NOTCH1P46531 2555 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 ZNF727A8MUV8 499 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 J3KRW8 73 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 GCGP01275 180 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 INSP01308 110 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 CENPWQ5EE01 88 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 SOHLH1Q5JUK2 328 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 PRR9Q5T870 116 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 C1orf158Q8N1D5 194 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 TMEM256Q8N2U0 113 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 RNF183Q96D59 192 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 SMIM7Q9BQ49 75 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 BIN3Q9NQY0 253 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 TP53TG1Q9Y2A0 90 aa8.97□□□□□ -0.97
LINC00339-204ENST00000434233 TRBV20OR9-2A0A075B6H5 130 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 TRAV12-3A0A0B4J271 114 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 TRAV21A0A0B4J279 112 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 FABP5P3A8MUU1 101 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 ZNF80P51504 273 aaPredicted RBP8.96□□□□□ -0.98
LINC00339-204ENST00000434233 BTN1A1Q13410 526 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 NDUFA5Q16718 116 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 TMEM241Q24JQ0 296 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 OCC1Q8TAD7 63 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 RCHY1Q96PM5 261 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 B9D2Q9BPU9 175 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 NIPSNAP3BQ9BS92 247 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 GOLT1BQ9Y3E0 138 aa8.96□□□□□ -0.98
LINC00339-204ENST00000434233 NBEAL1Q6ZS30 2694 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 TMEM218A2RU14 115 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 H7BYZ3 331 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 SPRY2O43597 315 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 PFN1P07737 140 aaKnown RBP8.95□□□□□ -0.98
LINC00339-204ENST00000434233 SFTA3P0C7M3 94 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 CRIP1P50238 77 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 ZNF705AQ6ZN79 300 aaPredicted RBP8.95□□□□□ -0.98
LINC00339-204ENST00000434233 NHLRC2Q8NBF2 726 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 ZC2HC1AQ96GY0 325 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 LINC01587Q99440 93 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 NEU1Q99519 415 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 TM2D3Q9BRN9 247 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 LINC00467Q9BRT7 94 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 NAT8Q9UHE5 227 aa8.95□□□□□ -0.98
LINC00339-204ENST00000434233 RBMY1A1P0DJD3 496 aaKnown RBP8.94□□□□□ -0.98
LINC00339-204ENST00000434233 RBMY1CP0DJD4 496 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 MGST1P10620 155 aaKnown RBP8.94□□□□□ -0.98
LINC00339-204ENST00000434233 RBMY1FQ15415 496 aaKnown RBP8.94□□□□□ -0.98
LINC00339-204ENST00000434233 DEFB135Q30KP9 77 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 FAM162BQ5T6X4 162 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 SPATA25Q9BR10 227 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 OVOL2Q9BRP0 275 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 PYGO2Q9BRQ0 406 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 TMEM208Q9BTX3 173 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 SDF2L1Q9HCN8 221 aa8.94□□□□□ -0.98
LINC00339-204ENST00000434233 PGPEP1LA6NFU8 196 aa8.93□□□□□ -0.98
LINC00339-204ENST00000434233 SMIM9A6NGZ8 99 aa8.93□□□□□ -0.98
LINC00339-204ENST00000434233 NHLRC4P0CG21 123 aaPredicted RBP8.93□□□□□ -0.98
LINC00339-204ENST00000434233 Q6ZQT7 251 aa8.93□□□□□ -0.98
LINC00339-204ENST00000434233 ZMAT4Q9H898 229 aa8.93□□□□□ -0.98
LINC00339-204ENST00000434233 IGHV3OR16-12A0A075B7B8 117 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 IGHV1OR15-1A0A075B7D0 117 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 F8W036 122 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 K7EN84 100 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 SH2D1AO60880 128 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 RPL23P62829 140 aaKnown RBP8.92□□□□□ -0.98
LINC00339-204ENST00000434233 TDRG1Q3Y452 100 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 FAM159AQ6UWV7 190 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 LINC01551Q86U37 167 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 OR11H2Q8NH07 326 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 DAZAP1Q96EP5 407 aaKnown RBP8.92□□□□□ -0.98
LINC00339-204ENST00000434233 KCNS1Q96KK3 526 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 SEC11CQ9BY50 192 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 X6R8D5 127 aa8.92□□□□□ -0.98
LINC00339-204ENST00000434233 C19orf71A6NCJ1 209 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 OR5I1Q13606 314 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 ANXA2RQ3ZCQ2 193 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 C10orf91Q5T1B1 145 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 PRR27Q6MZM9 219 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 FAM231DQ6ZW35 169 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 SLC7A5P1Q8MH63 180 aa8.91□□□□□ -0.98
LINC00339-204ENST00000434233 IGKV3D-20A0A0C4DH25 116 aa8.9□□□□□ -0.98
LINC00339-204ENST00000434233 ZNF705GA8MUZ8 300 aaPredicted RBP8.9□□□□□ -0.98
LINC00339-204ENST00000434233 ORM1P02763 201 aa8.9□□□□□ -0.98
LINC00339-204ENST00000434233 MIFP14174 115 aa8.9□□□□□ -0.98
LINC00339-204ENST00000434233 PNRC1Q12796 327 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms