RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 H2BFSP57053 126 aa11.75□□□□□ -0.53
TRIM39-209ENST00000428728 RANP62826 216 aaKnown RBP11.75□□□□□ -0.53
TRIM39-209ENST00000428728 IFITM3Q01628 133 aa11.75□□□□□ -0.53
TRIM39-209ENST00000428728 MUC21Q5SSG8 566 aa11.75□□□□□ -0.53
TRIM39-209ENST00000428728 EIF3GO75821 320 aaKnown RBP eCLIP11.74□□□□□ -0.53
TRIM39-209ENST00000428728 LINC00315P59091 139 aa11.74□□□□□ -0.53
TRIM39-209ENST00000428728 MAPKAPK5-AS1Q8N8E1 139 aa11.74□□□□□ -0.53
TRIM39-209ENST00000428728 SMIM3Q9BZL3 60 aa11.74□□□□□ -0.53
TRIM39-209ENST00000428728 HSPB11Q9Y547 144 aa11.74□□□□□ -0.53
TRIM39-209ENST00000428728 SIVA1O15304 175 aa11.73□□□□□ -0.53
TRIM39-209ENST00000428728 NXPH4O95158 308 aa11.73□□□□□ -0.53
TRIM39-209ENST00000428728 KHDC3LQ587J8 217 aa11.73□□□□□ -0.53
TRIM39-209ENST00000428728 C8orf49Q96NF6 230 aa11.73□□□□□ -0.53
TRIM39-209ENST00000428728 RPH3ALQ9UNE2 315 aa11.73□□□□□ -0.53
TRIM39-209ENST00000428728 RBAKDNA6NC62 111 aa11.72□□□□□ -0.53
TRIM39-209ENST00000428728 SSNA1O43805 119 aa11.72□□□□□ -0.53
TRIM39-209ENST00000428728 MPC2O95563 127 aa11.72□□□□□ -0.53
TRIM39-209ENST00000428728 KRTAP10-2P60368 255 aa11.72□□□□□ -0.53
TRIM39-209ENST00000428728 PRO0255Q9UI72 69 aa11.72□□□□□ -0.53
TRIM39-209ENST00000428728 HSPG2P98160 4391 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 TRBV7-9A0A0J9YWB2 115 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 IFNA5P01569 189 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 PET100P0DJ07 73 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 CRYBA4P53673 196 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 ZNF266Q14584 549 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 LYPD1Q8N2G4 141 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 SCGB1C1Q8TD33 95 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 HYLS1Q96M11 299 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 MDFICQ9P1T7 246 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 MBD2Q9UBB5 411 aa11.71□□□□□ -0.53
TRIM39-209ENST00000428728 TRGV4A0A0C4DH28 118 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 DIRC3C9JPN6 131 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 SFTA3P0C7M3 94 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 BTF3P20290 206 aaKnown RBP11.7□□□□□ -0.54
TRIM39-209ENST00000428728 TAS2R45P59539 299 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 FHL2Q14192 279 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 TMEM183BQ1AE95 376 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 TMEM183AQ8IXX5 376 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 MARVELD1Q9BSK0 173 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 PTTG2Q9NZH5 202 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 NAGKQ9UJ70 344 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 HHLA3Q9XRX5 114 aa11.7□□□□□ -0.54
TRIM39-209ENST00000428728 RYR1P21817 5038 aa11.69□□□□□ -0.54
TRIM39-209ENST00000428728 RPL12P30050 165 aaKnown RBP11.69□□□□□ -0.54
TRIM39-209ENST00000428728 SLAQ13239 276 aa11.69□□□□□ -0.54
TRIM39-209ENST00000428728 MRPL23Q16540 153 aaKnown RBP11.68□□□□□ -0.54
TRIM39-209ENST00000428728 Q6AWC8 147 aa11.68□□□□□ -0.54
TRIM39-209ENST00000428728 FAM159AQ6UWV7 190 aa11.68□□□□□ -0.54
TRIM39-209ENST00000428728 Q6ZRN7 208 aaPredicted RBP11.68□□□□□ -0.54
TRIM39-209ENST00000428728 CMTM2Q8TAZ6 248 aa11.68□□□□□ -0.54
TRIM39-209ENST00000428728 ZNF479Q96JC4 524 aa11.68□□□□□ -0.54
TRIM39-209ENST00000428728 OTORQ9NRC9 128 aa11.68□□□□□ -0.54
TRIM39-209ENST00000428728 TRGV11A0A075B6L2 103 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 DEFA1P59665 94 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 DEFA3P59666 94 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 NEGR1Q7Z3B1 354 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 WFDC1Q9HC57 220 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 LENEPQ9Y5L5 61 aa11.67□□□□□ -0.54
TRIM39-209ENST00000428728 LRP1BQ9NZR2 4599 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 PGPA6NDG6 321 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 F6UZH7 168 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 SRIP30626 198 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 RAB2AP61019 212 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 ACOT6Q3I5F7 207 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-209ENST00000428728 LYPD5Q6UWN5 251 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 GOLT1AQ6ZVE7 132 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 PCNPQ8WW12 178 aaKnown RBP11.66□□□□□ -0.54
TRIM39-209ENST00000428728 SPXQ9BT56 116 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 TNFRSF18Q9Y5U5 241 aa11.66□□□□□ -0.54
TRIM39-209ENST00000428728 A0A1W2PPV4 95 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 A6NHS1 94 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 K7EQD1 137 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 HMGB3O15347 200 aaKnown RBP11.65□□□□□ -0.54
TRIM39-209ENST00000428728 GYPEP15421 78 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 FUSP35637 526 aaKnown RBP eCLIP11.65□□□□□ -0.54
TRIM39-209ENST00000428728 FAM74A1Q5RGS3 127 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 OR10G4Q8NGN3 311 aa11.65□□□□□ -0.54
TRIM39-209ENST00000428728 TRAV8-1A0A0A6YYK1 113 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 ERVFC1-1P60608 527 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 GNG5P63218 68 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 PQLC2Q6ZP29 291 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 WFDC10BQ8IUB3 73 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 Q8N1X5 172 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 TMED6Q8WW62 240 aa11.64□□□□□ -0.55
TRIM39-209ENST00000428728 GNRH2O43555 120 aa11.63□□□□□ -0.55
TRIM39-209ENST00000428728 RASL10AQ92737 203 aa11.63□□□□□ -0.55
TRIM39-209ENST00000428728 SCRT2Q9NQ03 307 aa11.63□□□□□ -0.55
TRIM39-209ENST00000428728 LY96Q9Y6Y9 160 aa11.63□□□□□ -0.55
TRIM39-209ENST00000428728 TRAV4A0A0B4J268 109 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 TRAV21A0A0B4J279 112 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 IGHV3-16A0A0C4DH30 117 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 EREGO14944 169 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 TYMSP04818 313 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 DNAH10OSP0CZ25 163 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 ARL14EPLP0DKL9 152 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 TDRG1Q3Y452 100 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 IQCF2Q8IXL9 164 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 TVP23CQ96ET8 276 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 TREM1Q9NP99 234 aa11.62□□□□□ -0.55
TRIM39-209ENST00000428728 ABCA13Q86UQ4 5058 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms