RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 MRPL35Q9NZE8 188 aaKnown RBP11.68□□□□□ -0.54
C9orf3-204ENST00000424143 WFDC3Q8IUB2 231 aa11.68□□□□□ -0.54
C9orf3-204ENST00000424143 SMIM2Q9BVW6 85 aa11.68□□□□□ -0.54
C9orf3-204ENST00000424143 POLEQ07864 2286 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 TRBV7-3A0A075B6L6 115 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 TRAV40A0A0B4J280 105 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 TRBV7-9A0A0J9YWB2 115 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-204ENST00000424143 PPP1R17O96001 155 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 IGHV3-23P01764 117 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 CLEC3BP05452 202 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 GATA1P15976 413 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-204ENST00000424143 UBE2E1P51965 193 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 C12orf74Q32Q52 190 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 IGFL4Q6B9Z1 124 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 LINC00477Q96M19 166 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 ZNF318Q5VUA4 2279 aa11.67□□□□□ -0.54
C9orf3-204ENST00000424143 RIPPLY3P57055 190 aa11.66□□□□□ -0.54
C9orf3-204ENST00000424143 RPL32P62910 135 aaKnown RBP11.66□□□□□ -0.54
C9orf3-204ENST00000424143 C9orf139Q6ZV77 190 aa11.66□□□□□ -0.54
C9orf3-204ENST00000424143 TOMM6Q96B49 74 aa11.66□□□□□ -0.54
C9orf3-204ENST00000424143 NAA38Q9BRA0 125 aaKnown RBP11.66□□□□□ -0.54
C9orf3-204ENST00000424143 TMEM160Q9NX00 188 aa11.66□□□□□ -0.54
C9orf3-204ENST00000424143 BRI3O95415 125 aa11.65□□□□□ -0.54
C9orf3-204ENST00000424143 TRGV3P03979 118 aa11.65□□□□□ -0.54
C9orf3-204ENST00000424143 PRB4P10163 310 aaPredicted RBP11.65□□□□□ -0.54
C9orf3-204ENST00000424143 CRIP2P52943 208 aaPredicted RBP11.65□□□□□ -0.54
C9orf3-204ENST00000424143 C8orf86Q6ZUL3 223 aa11.65□□□□□ -0.54
C9orf3-204ENST00000424143 POM121L12Q8N7R1 296 aa11.65□□□□□ -0.54
C9orf3-204ENST00000424143 CCDC140Q96MF4 163 aa11.65□□□□□ -0.54
C9orf3-204ENST00000424143 NHP2Q9NX24 153 aaKnown RBP11.65□□□□□ -0.54
C9orf3-204ENST00000424143 CHTOPQ9Y3Y2 248 aaKnown RBP11.65□□□□□ -0.54
C9orf3-204ENST00000424143 K7ENP7 123 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 RRN3P1Q2M238 152 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 PRR30Q53SZ7 412 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-204ENST00000424143 MAPKAPK5-AS1Q8N8E1 139 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 ITLN2Q8WWU7 325 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-204ENST00000424143 AJUBAQ96IF1 538 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 ZNF479Q96JC4 524 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 SPANXB1Q9NS25 103 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-204ENST00000424143 CNOT1A5YKK6 2376 aaKnown RBP11.64□□□□□ -0.55
C9orf3-204ENST00000424143 PCNX1Q96RV3 2341 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 SPANXN1Q5VSR9 72 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 APRG1Q8IVJ8 170 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 RNF182Q8N6D2 247 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 NEXN-AS1Q8NBZ9 246 aa11.64□□□□□ -0.55
C9orf3-204ENST00000424143 MYMXA0A1B0GTQ4 84 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 TEX48A0A1B0GUV7 120 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 FAM223BA6NKX1 122 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 OVOL1O14753 267 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 PPIFP30405 207 aaKnown RBP11.63□□□□□ -0.55
C9orf3-204ENST00000424143 CD300EQ496F6 205 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-204ENST00000424143 FAM223AQ8IWN6 122 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 GLMPQ8WWB7 406 aa11.63□□□□□ -0.55
C9orf3-204ENST00000424143 OR11H12B2RN74 326 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 ATP6V0E1O15342 81 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 CIDEAO60543 219 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 TCTAP57738 103 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 C19orf54Q5BKX5 351 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 OR11H1Q8NG94 326 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 OR11H2Q8NH07 326 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 SIGMAR1Q99720 223 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 SPATA25Q9BR10 227 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 COL6A3P12111 3177 aa11.62□□□□□ -0.55
C9orf3-204ENST00000424143 EP300Q09472 2414 aaPredicted RBP11.61□□□□□ -0.55
C9orf3-204ENST00000424143 CEP250Q9BV73 2442 aa11.61□□□□□ -0.55
C9orf3-204ENST00000424143 TRAV21A0A0B4J279 112 aa11.61□□□□□ -0.55
C9orf3-204ENST00000424143 SUMO2P61956 95 aaKnown RBP11.61□□□□□ -0.55
C9orf3-204ENST00000424143 RPL24P83731 157 aaKnown RBP11.61□□□□□ -0.55
C9orf3-204ENST00000424143 TM4SF20Q53R12 229 aa11.61□□□□□ -0.55
C9orf3-204ENST00000424143 TTTY13Q9BZ97 58 aa11.61□□□□□ -0.55
C9orf3-204ENST00000424143 DPH3P1Q9H4G8 78 aa11.61□□□□□ -0.55
C9orf3-204ENST00000424143 IGHV1-69DA0A0B4J2H0 117 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 FAM90A27PA6NNH2 459 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 K7ERJ3 54 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 ATP5G2Q06055 141 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 PAPPA-AS1Q5QFB9 102 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 CLEC19AQ6UXS0 136 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 ATP6V0E2Q8NHE4 81 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 FAM19A4Q96LR4 140 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 SCGB3A1Q96QR1 104 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 HIST1H4GQ99525 98 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 PRO0461Q9UI25 63 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 APC2O95996 2303 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 NXPH4O95158 308 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 ZFP36P26651 326 aaKnown RBP11.6□□□□□ -0.55
C9orf3-204ENST00000424143 SAMD13Q5VXD3 122 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 UFC1Q9Y3C8 167 aa11.6□□□□□ -0.55
C9orf3-204ENST00000424143 TMEM238LA0A1B0GVL6 79 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 A6NJY4 79 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 ECSCRQ19T08 205 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 GAGE13Q4V321 117 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 ZFAND2AQ8N6M9 145 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 RASL10AQ92737 203 aa11.59□□□□□ -0.55
C9orf3-204ENST00000424143 LOC400499M0QZD8 3231 aa11.58□□□□□ -0.56
C9orf3-204ENST00000424143 WDFY4Q6ZS81 3184 aa11.58□□□□□ -0.56
C9orf3-204ENST00000424143 IGHV4OR15-8A0A075B7B6 117 aa11.58□□□□□ -0.56
C9orf3-204ENST00000424143 A0A087WW49 117 aa11.58□□□□□ -0.56
C9orf3-204ENST00000424143 TCF15Q12870 199 aa11.58□□□□□ -0.56
C9orf3-204ENST00000424143 LCNL1Q6ZST4 164 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms