RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 Q8N9W7 124 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 MSRB1Q9NZV6 116 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 SVILO95425 2214 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 FAM208BQ5VWN6 2430 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 PLXNB1O43157 2135 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 IGKV2D-26A0A0A0MRZ7 120 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 IGKV3D-20A0A0C4DH25 116 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 TMEM238LA0A1B0GVL6 79 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 A0A1B0GWB2 263 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 A6NJY4 79 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 TMEM238C9JI98 176 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 F8VRH5 84 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 SPANXN1Q5VSR9 72 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 SMIM2Q9BVW6 85 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 AGPAT4-IT1Q9H0P7 198 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 U3KQE9 123 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 ICE1Q9Y2F5 2266 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 CFAP47Q6ZTR5 3102 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 FRYLO94915 3013 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 ARFGEF3Q5TH69 2177 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 SPTBN2O15020 2390 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 IGHV7-4-1A0A0J9YVY3 117 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 TRBV7-9A0A0J9YWB2 115 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 CENPVL3A0A0U1RRI6 287 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 A0A1W2PRD5 423 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 A0A1W2PRF3 423 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 A0A1W2PRM7 423 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 OR11H12B2RN74 326 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 IGLL5B9A064 214 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 HLA-DMBP28068 263 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 UBE2E1P51965 193 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 ERCC8Q13216 396 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 C11orf71Q6IPW1 123 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 FOXI2Q6ZQN5 318 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 GTSCR1Q86UQ5 136 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 WFDC3Q8IUB2 231 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 OR11H1Q8NG94 326 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 OR11H2Q8NH07 326 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 LINC01560Q8TB33 94 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 ZNF479Q96JC4 524 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 TMEM160Q9NX00 188 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 NHP2Q9NX24 153 aaKnown RBP8.48□□□□□ -1.05
LIMS1-207ENST00000422797 MRPL35Q9NZE8 188 aaKnown RBP8.48□□□□□ -1.05
LIMS1-207ENST00000422797 MSRB2Q9Y3D2 182 aa8.48□□□□□ -1.05
LIMS1-207ENST00000422797 FAM223BA6NKX1 122 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 PRAC2D3DTV9 90 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 IGHV3-23P01764 117 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 CLEC3BP05452 202 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 RPL24P83731 157 aaKnown RBP8.47□□□□□ -1.05
LIMS1-207ENST00000422797 PAPPA-AS1Q5QFB9 102 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 LYRM7Q5U5X0 104 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 FAM223AQ8IWN6 122 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 LINC00477Q96M19 166 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 ZGRF1Q86YA3 2104 aa8.47□□□□□ -1.05
LIMS1-207ENST00000422797 TRAV40A0A0B4J280 105 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 OVOL1O14753 267 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 RIPPLY3P57055 190 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 RPL32P62910 135 aaKnown RBP8.46□□□□□ -1.05
LIMS1-207ENST00000422797 C12orf74Q32Q52 190 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 C8orf86Q6ZUL3 223 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 TOMM6Q96B49 74 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 HIST1H4GQ99525 98 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 SIRPDQ9H106 197 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 UFC1Q9Y3C8 167 aa8.46□□□□□ -1.05
LIMS1-207ENST00000422797 TRAV8-2A0A0B4J237 113 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 TRAV21A0A0B4J279 112 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 MYMXA0A1B0GTQ4 84 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 CLPSL1A2RUU4 121 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 FAM90A27PA6NNH2 459 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 RRN3P1Q2M238 152 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 TM4SF20Q53R12 229 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 SAMD13Q5VXD3 122 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 IGFL4Q6B9Z1 124 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 SIGMAR1Q99720 223 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 NAA38Q9BRA0 125 aaKnown RBP8.45□□□□□ -1.06
LIMS1-207ENST00000422797 DPH3P1Q9H4G8 78 aa8.45□□□□□ -1.06
LIMS1-207ENST00000422797 CHTOPQ9Y3Y2 248 aaKnown RBP8.45□□□□□ -1.06
LIMS1-207ENST00000422797 TRBV7-3A0A075B6L6 115 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 IGHV1-69DA0A0B4J2H0 117 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 K7ENP7 123 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 CIDEAO60543 219 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 TRGV3P03979 118 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 CRIP2P52943 208 aaPredicted RBP8.44□□□□□ -1.06
LIMS1-207ENST00000422797 TCTAP57738 103 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 SUMO2P61956 95 aaKnown RBP8.44□□□□□ -1.06
LIMS1-207ENST00000422797 ATP5G2Q06055 141 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 ECSCRQ19T08 205 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 CD300EQ496F6 205 aaPredicted RBP8.44□□□□□ -1.06
LIMS1-207ENST00000422797 RNF182Q8N6D2 247 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 CCDC140Q96MF4 163 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 SCGB3A1Q96QR1 104 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 C11orf21Q9P2W6 132 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 TEX48A0A1B0GUV7 120 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 ATP6V0E1O15342 81 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 BRI3O95415 125 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 GATA1P15976 413 aaPredicted RBP8.44□□□□□ -1.06
LIMS1-207ENST00000422797 ASIPP42127 132 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 OR10J6PQ8NGY7 276 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 ATP6V0E2Q8NHE4 81 aa8.44□□□□□ -1.06
LIMS1-207ENST00000422797 C16orf92Q96LL3 132 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms