RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 EDF1O60869 148 aaKnown RBP2.34□□□□□ -2.04
BRCA1-204ENST00000412061 SNAPC5O75971 98 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 RBP2P50120 134 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 SCIMPQ6UWF3 145 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 Q6ZUT4 128 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 Q8N2B8 174 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 SPACA4Q8TDM5 124 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 PP6455Q8WZ26 134 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 DPH3Q96FX2 82 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 Q96M85 177 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 SAR1AQ9NR31 198 aa2.34□□□□□ -2.04
BRCA1-204ENST00000412061 SCAPERQ9BY12 1400 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-204ENST00000412061 COL4A4P53420 1690 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-204ENST00000412061 CUL7Q14999 1698 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 NCOA2Q15596 1464 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 KTN1Q86UP2 1357 aaKnown RBP2.33□□□□□ -2.04
BRCA1-204ENST00000412061 A0A087WSZ3 146 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 A6NN06 94 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 CCDC179H3BU77 68 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 P0C880 135 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 ASB16-AS1Q495Z4 193 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 C2orf82Q6UX34 121 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 CASC2Q6XLA1 102 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 LINC00269Q8N2A0 174 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 COA4Q9NYJ1 87 aa2.33□□□□□ -2.04
BRCA1-204ENST00000412061 ZFHX2Q9C0A1 2572 aaPredicted RBP2.33□□□□□ -2.04
BRCA1-204ENST00000412061 PXDNLA1KZ92 1463 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 CCDC88BA6NC98 1476 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 TRGV4A0A0C4DH28 118 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 ZNF736B4DX44 427 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-204ENST00000412061 H3BRN7 92 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 M0R2P5 195 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 CXCL8P10145 99 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 BRS3P32247 399 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 GNG4P50150 75 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 SNX29P2Q8IUI4 249 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 Q8TAT8 98 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 SMIM7Q9BQ49 75 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 SNRNP25Q9BV90 132 aaKnown RBP2.32□□□□□ -2.04
BRCA1-204ENST00000412061 BOKQ9UMX3 212 aaPredicted RBP2.32□□□□□ -2.04
BRCA1-204ENST00000412061 MPC1Q9Y5U8 109 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 MUC4Q99102 2169 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 MAP3K1Q13233 1512 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 PLXNA4Q9HCM2 1894 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 CNTLNQ9NXG0 1405 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 KIDINS220Q9ULH0 1771 aa2.32□□□□□ -2.04
BRCA1-204ENST00000412061 ADGRB1O14514 1584 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 KIF21BO75037 1637 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 TRAV12-2A0A075B6T6 113 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 TRAV14DV4A0A0A6YYC5 116 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 PITX3O75364 302 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 PDE6HQ13956 83 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 Q1T7F1 81 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 MIC13Q5XKP0 118 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 PPP3R2Q96LZ3 170 aa2.31□□□□□ -2.04
BRCA1-204ENST00000412061 NOP16Q9Y3C1 178 aaKnown RBP2.31□□□□□ -2.04
BRCA1-204ENST00000412061 CHCHD2Q9Y6H1 151 aaPredicted RBP2.31□□□□□ -2.04
BRCA1-204ENST00000412061 TRPM7Q96QT4 1865 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 UQCRHLA0A096LP55 91 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 HYPMO75409 117 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 UQCRHP07919 91 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 HIST1H1DP16402 221 aaKnown RBP2.3□□□□□ -2.04
BRCA1-204ENST00000412061 LINC01545Q5VT33 79 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 HCP5Q6MZN7 132 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 ZCCHC23Q6ZST2 131 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 ZNF833PQ6ZTB9 187 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 GKN2Q86XP6 184 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 ATP6V0E2Q8NHE4 81 aa2.3□□□□□ -2.04
BRCA1-204ENST00000412061 ADGRB3O60242 1522 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 ZMYM4Q5VZL5 1548 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 COL4A5P29400 1685 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 IFITM5A6NNB3 132 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 IGKV1-17P01599 117 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 PPP3R1P63098 170 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 BTG2P78543 158 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 MIR22HGQ0VDD5 57 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 C1orf137Q5JT78 98 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 ATP11AUNQ6ZP68 121 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 FOXI2Q6ZQN5 318 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
BRCA1-204ENST00000412061 LYPD1Q8N2G4 141 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 COPS9Q8WXC6 57 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 SEC11CQ9BY50 192 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 RERGLQ9H628 205 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 MYOM2P54296 1465 aa2.29□□□□□ -2.04
BRCA1-204ENST00000412061 HEATR1Q9H583 2144 aaKnown RBP2.29□□□□□ -2.04
BRCA1-204ENST00000412061 DISP1Q96F81 1524 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 CITO14578 2027 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 ABCC8Q09428 1581 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 UACAQ9BZF9 1416 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 LAMB2P55268 1798 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 IGKV1D-17A0A075B6S4 117 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 J3QLW9 94 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 TPPP2P59282 170 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 TXNDC17Q9BRA2 123 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 TTTY12Q9BZ98 90 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 ERICH3Q5RHP9 1530 aa2.28□□□□□ -2.04
BRCA1-204ENST00000412061 COL1A2P08123 1366 aa2.28□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms