RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RPH3ALQ9UNE2 315 aa13.29□□□□□ -0.28
SF3A1-202ENST00000411423 HERC2O95714 4834 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 IGHV1OR15-1A0A075B7D0 117 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 TRBV7-9A0A0J9YWB2 115 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 STAG3L2P0CL84 134 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 STAG3L3P0CL85 134 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 TCL1AP56279 114 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 ZNF680Q8NEM1 530 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 OR2T35Q8NGX2 323 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 RAB24Q969Q5 203 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 TVP23CQ96ET8 276 aa13.28□□□□□ -0.28
SF3A1-202ENST00000411423 TRAV26-1A0A087WT03 109 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 A0A0J9YY99 117 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 SPINK4O60575 86 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 OR5I1Q13606 314 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 MUC21Q5SSG8 566 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 SUN5Q8TC36 379 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 ASB13Q8WXK3 278 aa13.27□□□□□ -0.29
SF3A1-202ENST00000411423 TRGV1A0A0A0MS02 117 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 TRAV8-1A0A0A6YYK1 113 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 SMLR1H3BR10 107 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 RGS13O14921 159 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 GOLT1AQ6ZVE7 132 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 RXFP4Q8TDU9 374 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 LINC00588Q9Y4M8 146 aa13.26□□□□□ -0.29
SF3A1-202ENST00000411423 PKHD1P08F94 4074 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 DNAH11Q96DT5 4516 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 A0A1B0GVY2 172 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 GCHFRP30047 84 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 ZNF726P1Q15940 193 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 IBA57Q5T440 356 aaKnown RBP13.25□□□□□ -0.29
SF3A1-202ENST00000411423 Q6AWC8 147 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 ZNRF2Q8NHG8 242 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 VSIG2Q96IQ7 327 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 SGK494Q96LW2 274 aa13.25□□□□□ -0.29
SF3A1-202ENST00000411423 MRPL16Q9NX20 251 aaKnown RBP13.25□□□□□ -0.29
SF3A1-202ENST00000411423 KIAA1109Q2LD37 5005 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 SERF2P84101 59 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 INO80EQ8NBZ0 244 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-202ENST00000411423 CMTM2Q8TAZ6 248 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 TMED6Q8WW62 240 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 GNPNAT1Q96EK6 184 aaPredicted RBP13.24□□□□□ -0.29
SF3A1-202ENST00000411423 C18orf15Q96N68 181 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 MDFICQ9P1T7 246 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 LENEPQ9Y5L5 61 aa13.24□□□□□ -0.29
SF3A1-202ENST00000411423 F6UZH7 168 aa13.23□□□□□ -0.29
SF3A1-202ENST00000411423 ATG101Q9BSB4 218 aa13.23□□□□□ -0.29
SF3A1-202ENST00000411423 CYTL1Q9NRR1 136 aa13.23□□□□□ -0.29
SF3A1-202ENST00000411423 TRGV2A0A075B6R0 118 aa13.22□□□□□ -0.29
SF3A1-202ENST00000411423 GGTLC3B5MD39 225 aa13.22□□□□□ -0.29
SF3A1-202ENST00000411423 ARL6IP6Q8N6S5 226 aa13.22□□□□□ -0.29
SF3A1-202ENST00000411423 ST6GAL2Q96JF0 529 aa13.22□□□□□ -0.29
SF3A1-202ENST00000411423 IGHV3-53P01767 116 aa13.21□□□□□ -0.29
SF3A1-202ENST00000411423 FAM3BP58499 235 aaPredicted RBP13.21□□□□□ -0.29
SF3A1-202ENST00000411423 FAM74A1Q5RGS3 127 aa13.21□□□□□ -0.29
SF3A1-202ENST00000411423 LINC00336Q6ZUF6 198 aa13.21□□□□□ -0.29
SF3A1-202ENST00000411423 ARPC5LQ9BPX5 153 aa13.21□□□□□ -0.29
SF3A1-202ENST00000411423 ARPC5O15511 151 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 MBP02144 154 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 ZNF415Q09FC8 603 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 TMEM183BQ1AE95 376 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 ESRGQ1W209 222 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 TMEM183AQ8IXX5 376 aa13.2□□□□□ -0.3
SF3A1-202ENST00000411423 ACTR3CQ9C0K3 210 aaPredicted RBP13.2□□□□□ -0.3
SF3A1-202ENST00000411423 A0A096LPF7 62 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 BORCS7-ASMTA0A0B4J1R7 106 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 PRSS29PA6NIE9 313 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 GNRH2O43555 120 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 IGLV2-11P01706 119 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 TCRAP04437 139 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 ZNF80P51504 273 aaPredicted RBP13.19□□□□□ -0.3
SF3A1-202ENST00000411423 C8orf49Q96NF6 230 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 NAGKQ9UJ70 344 aa13.19□□□□□ -0.3
SF3A1-202ENST00000411423 H3BNG1 76 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 CXorf1O96002 111 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 CCL18P55774 89 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 SUMO1P63165 101 aaKnown RBP13.18□□□□□ -0.3
SF3A1-202ENST00000411423 C5orf17Q8NAS9 161 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 OR11H4Q8NGC9 324 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 TREM1Q9NP99 234 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 C11orf21Q9P2W6 132 aa13.18□□□□□ -0.3
SF3A1-202ENST00000411423 MUC4Q99102 2169 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 NBDYA0A0U1RRE5 68 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 FHL2Q14192 279 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 TDRG1Q3Y452 100 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 FAM159AQ6UWV7 190 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 KRTAP1-5Q9BYS1 174 aa13.17□□□□□ -0.3
SF3A1-202ENST00000411423 IGHV3-16A0A0C4DH30 117 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 TYMSP04818 313 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 SFTA3P0C7M3 94 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 FGF8P55075 233 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-202ENST00000411423 LINC00479Q96M42 142 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 TMEM167BQ9NRX6 74 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 EPDR1Q9UM22 224 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 PSG8Q9UQ74 426 aa13.16□□□□□ -0.3
SF3A1-202ENST00000411423 TRAV21A0A0B4J279 112 aa13.15□□□□□ -0.3
SF3A1-202ENST00000411423 CTXND1A0A1B0GTU2 59 aa13.15□□□□□ -0.3
SF3A1-202ENST00000411423 C1orf134Q5TEV5 83 aa13.15□□□□□ -0.3
SF3A1-202ENST00000411423 IQCF2Q8IXL9 164 aa13.15□□□□□ -0.3
SF3A1-202ENST00000411423 TRGV11A0A075B6L2 103 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms