RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 LINC00310P59036 64 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 TCTEX1D4Q5JR98 221 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 WFDC3Q8IUB2 231 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 OR8A1Q8NGG7 326 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 ALKBH7Q9BT30 221 aaPredicted RBP14.31□□□□□ -0.12
USP39-202ENST00000409025 UNC79Q9P2D8 2635 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 C2orf70A6NJV1 201 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 M0QZ24 198 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 DEFB136Q30KP8 78 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 FER1L6-AS1Q8NA97 138 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 GATD1Q8NB37 220 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 DPF1Q92782 380 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 MS4A6AQ9H2W1 248 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 NIT2Q9NQR4 276 aa14.31□□□□□ -0.12
USP39-202ENST00000409025 TLN2Q9Y4G6 2542 aa14.3□□□□□ -0.12
USP39-202ENST00000409025 RNASE1P07998 156 aaKnown RBP14.3□□□□□ -0.12
USP39-202ENST00000409025 PAFAH1B2P68402 229 aa14.3□□□□□ -0.12
USP39-202ENST00000409025 C18orf32Q8TCD1 76 aa14.3□□□□□ -0.12
USP39-202ENST00000409025 IGLC6P0CF74 106 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 SLURP1P55000 103 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 PRR31Q5SQ13 230 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 OR11H1Q8NG94 326 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 CTRLP40313 264 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 DEFB1P60022 68 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 OR1N2Q8NGR9 330 aa14.29□□□□□ -0.12
USP39-202ENST00000409025 ZNF418Q8TF45 676 aaPredicted RBP14.29□□□□□ -0.12
USP39-202ENST00000409025 ITPR2Q14571 2701 aa14.28□□□□□ -0.12
USP39-202ENST00000409025 LOC102724200A0A096LPH7 203 aaPredicted RBP14.28□□□□□ -0.12
USP39-202ENST00000409025 F6UB75 175 aa14.28□□□□□ -0.12
USP39-202ENST00000409025 ZNF575Q86XF7 245 aa14.28□□□□□ -0.12
USP39-202ENST00000409025 KLHL30-AS1Q8NEE0 82 aa14.28□□□□□ -0.12
USP39-202ENST00000409025 HECTD1Q9ULT8 2610 aa14.28□□□□□ -0.12
USP39-202ENST00000409025 TFPI2P48307 235 aa14.27□□□□□ -0.12
USP39-202ENST00000409025 IQCJQ1A5X6 159 aa14.27□□□□□ -0.12
USP39-202ENST00000409025 WFDC12Q8WWY7 111 aa14.27□□□□□ -0.12
USP39-202ENST00000409025 SONP18583 2426 aaKnown RBP14.27□□□□□ -0.12
USP39-202ENST00000409025 IGKV3D-20A0A0C4DH25 116 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 TRBV7-9A0A0J9YWB2 115 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 ZNF493Q6ZR52 646 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 KCNS1Q96KK3 526 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 RCHY1Q96PM5 261 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 SAMD10Q9BYL1 202 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 C11orf21Q9P2W6 132 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 PEMTQ9UBM1 199 aa14.27□□□□□ -0.13
USP39-202ENST00000409025 PCP4L1A6NKN8 68 aa14.26□□□□□ -0.13
USP39-202ENST00000409025 K7EQG2 157 aa14.26□□□□□ -0.13
USP39-202ENST00000409025 SNRPD3P62318 126 aaKnown RBP14.26□□□□□ -0.13
USP39-202ENST00000409025 JOSD1Q15040 202 aaPredicted RBP14.26□□□□□ -0.13
USP39-202ENST00000409025 ZFAND2AQ8N6M9 145 aa14.26□□□□□ -0.13
USP39-202ENST00000409025 FAM19A4Q96LR4 140 aa14.26□□□□□ -0.13
USP39-202ENST00000409025 SMR3AQ99954 134 aa14.26□□□□□ -0.13
USP39-202ENST00000409025 SSTP61278 116 aa14.25□□□□□ -0.13
USP39-202ENST00000409025 PRR9Q5T870 116 aa14.25□□□□□ -0.13
USP39-202ENST00000409025 C16orf95Q9H693 158 aa14.25□□□□□ -0.13
USP39-202ENST00000409025 GPX1P07203 203 aa14.25□□□□□ -0.13
USP39-202ENST00000409025 TWIST1Q15672 202 aa14.25□□□□□ -0.13
USP39-202ENST00000409025 TRAV21A0A0B4J279 112 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 MUC21A0A0G2JKD1 596 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 MUC21A0A140T8X8 626 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 J3KRW8 73 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 ZNF688P0C7X2 276 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 HILS1P60008 231 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 PSMG4Q5JS54 123 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 MUC21Q5SSG8 566 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 DNLZQ5SXM8 178 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 DUX3Q96PT4 197 aa14.24□□□□□ -0.13
USP39-202ENST00000409025 LY6G6DO95868 133 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 ADAMTSL5Q6ZMM2 481 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 OR9G4Q8NGQ1 327 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 CNFNQ9BYD5 112 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 AKAP9Q99996 3911 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 NTF3P20783 257 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 APRG1Q8IVJ8 170 aa14.23□□□□□ -0.13
USP39-202ENST00000409025 Q6ZQT7 251 aa14.22□□□□□ -0.13
USP39-202ENST00000409025 LINC01006Q8NI28 216 aa14.22□□□□□ -0.13
USP39-202ENST00000409025 DLX4Q92988 240 aaPredicted RBP14.22□□□□□ -0.13
USP39-202ENST00000409025 ZNF324O75467 553 aaPredicted RBP14.21□□□□□ -0.13
USP39-202ENST00000409025 RNASE4P34096 147 aaKnown RBP14.21□□□□□ -0.13
USP39-202ENST00000409025 AMTP48728 403 aa14.21□□□□□ -0.13
USP39-202ENST00000409025 ACANP16112 2415 aa14.21□□□□□ -0.13
USP39-202ENST00000409025 CD28P10747 220 aa14.21□□□□□ -0.14
USP39-202ENST00000409025 PMCHP20382 165 aa14.21□□□□□ -0.14
USP39-202ENST00000409025 FAM104BQ5XKR9 115 aa14.21□□□□□ -0.14
USP39-202ENST00000409025 CDPF1Q6NVV7 123 aa14.21□□□□□ -0.14
USP39-202ENST00000409025 HIST2H2BDQ6DRA6 164 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 EBLN2Q6P2I7 272 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 RNASEKQ6P5S7 137 aaKnown RBP14.2□□□□□ -0.14
USP39-202ENST00000409025 NIT1Q86X76 327 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 C11orf44Q8N8P7 122 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 JMJD8Q96S16 334 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 NAGKQ9UJ70 344 aa14.2□□□□□ -0.14
USP39-202ENST00000409025 HSBP1O75506 76 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 A0A0J9YX75 114 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 CSN3P07498 182 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 CD33P20138 364 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 Q6ZWC4 215 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 AMN1Q8IY45 258 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 RAX2Q96IS3 184 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 TMEM191AQ9H0A3 160 aa14.19□□□□□ -0.14
USP39-202ENST00000409025 A0A1W2PRX2 142 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms