RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KIR3DS1Q14943 382 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 PRR27Q6MZM9 219 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 SMIM12Q96EX1 92 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 ZC2HC1AQ96GY0 325 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 SEC11CQ9BY50 192 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 K7EIL1 84 aa13.25□□□□□ -0.29
SDC1-203ENST00000403076 CA1P00915 261 aaPredicted RBP13.25□□□□□ -0.29
SDC1-203ENST00000403076 IGLV2-8P01709 118 aa13.25□□□□□ -0.29
SDC1-203ENST00000403076 MLST8Q9BVC4 326 aa13.25□□□□□ -0.29
SDC1-203ENST00000403076 C1QTNF4Q9BXJ3 329 aa13.25□□□□□ -0.29
SDC1-203ENST00000403076 C7orf71A4D174 169 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 A8MZ25 164 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 KLLNB2CW77 178 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 KRBOX1C9JBD0 128 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 ADCYAP1P18509 176 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 BTN1A1Q13410 526 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 ADIRFQ15847 76 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 PRR9Q5T870 116 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 BIN3Q9NQY0 253 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 LY96Q9Y6Y9 160 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 NBEAL1Q6ZS30 2694 aa13.24□□□□□ -0.29
SDC1-203ENST00000403076 TRAV12-3A0A0B4J271 114 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 KIR2DL5BA0A0G2JN68 375 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 KIR2DL5BA0A0G2JPC4 375 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 INSP01308 110 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 OR5I1Q13606 314 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 GFI1BQ5VTD9 330 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 KIR2DL5AQ8N109 375 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 KIR2DL5BQ8NHK3 375 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 SDF2L1Q9HCN8 221 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 FRMD6-AS1P0C7T7 363 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 ZNF80P51504 273 aaPredicted RBP13.23□□□□□ -0.29
SDC1-203ENST00000403076 C10orf91Q5T1B1 145 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 COX8CQ7Z4L0 72 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 LINC01551Q86U37 167 aa13.23□□□□□ -0.29
SDC1-203ENST00000403076 FABP5P3A8MUU1 101 aa13.22□□□□□ -0.29
SDC1-203ENST00000403076 CRXO43186 299 aaPredicted RBP13.22□□□□□ -0.29
SDC1-203ENST00000403076 RPL23P62829 140 aaKnown RBP13.22□□□□□ -0.29
SDC1-203ENST00000403076 FAM162BQ5T6X4 162 aa13.22□□□□□ -0.29
SDC1-203ENST00000403076 DAZAP1Q96EP5 407 aaKnown RBP13.22□□□□□ -0.29
SDC1-203ENST00000403076 TRAV21A0A0B4J279 112 aa13.21□□□□□ -0.29
SDC1-203ENST00000403076 K7EN84 100 aa13.21□□□□□ -0.29
SDC1-203ENST00000403076 PFN1P07737 140 aaKnown RBP13.21□□□□□ -0.29
SDC1-203ENST00000403076 LINC00322Q6ZN03 302 aaPredicted RBP13.21□□□□□ -0.29
SDC1-203ENST00000403076 TMEM208Q9BTX3 173 aa13.21□□□□□ -0.29
SDC1-203ENST00000403076 CARHSP1Q9Y2V2 147 aaKnown RBP13.21□□□□□ -0.29
SDC1-203ENST00000403076 IGHV3OR16-12A0A075B7B8 117 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 M0R036 132 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 UBE2CO00762 179 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 SH2D1AO60880 128 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
SDC1-203ENST00000403076 PNRC1Q12796 327 aaPredicted RBP13.2□□□□□ -0.3
SDC1-203ENST00000403076 Q6AWC8 147 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 MRAPQ8TCY5 172 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 FBN3Q75N90 2809 aa13.2□□□□□ -0.3
SDC1-203ENST00000403076 APOC3P02656 99 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 CRIP1P50238 77 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 Q6ZQT7 251 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 LINC01587Q99440 93 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 NAGKQ9UJ70 344 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 GOLT1BQ9Y3E0 138 aa13.19□□□□□ -0.3
SDC1-203ENST00000403076 ORM1P02763 201 aa13.18□□□□□ -0.3
SDC1-203ENST00000403076 ERVFC1-1P60608 527 aa13.18□□□□□ -0.3
SDC1-203ENST00000403076 C20orf144Q9BQM9 153 aa13.18□□□□□ -0.3
SDC1-203ENST00000403076 ZNF324O75467 553 aaPredicted RBP13.18□□□□□ -0.3
SDC1-203ENST00000403076 MUC21Q5SSG8 566 aa13.18□□□□□ -0.3
SDC1-203ENST00000403076 ISOC2Q96AB3 205 aa13.18□□□□□ -0.3
SDC1-203ENST00000403076 P01737 135 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 RBMY1A1P0DJD3 496 aaKnown RBP13.17□□□□□ -0.3
SDC1-203ENST00000403076 RBMY1CP0DJD4 496 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 HTN1P15515 57 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 RBMY1FQ15415 496 aaKnown RBP13.17□□□□□ -0.3
SDC1-203ENST00000403076 DEFB135Q30KP9 77 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 IBA57Q5T440 356 aaKnown RBP13.17□□□□□ -0.3
SDC1-203ENST00000403076 FAM159AQ6UWV7 190 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 C1orf158Q8N1D5 194 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 NUDT10Q8NFP7 164 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 NUDT11Q96G61 164 aa13.17□□□□□ -0.3
SDC1-203ENST00000403076 RNASE7Q9H1E1 156 aaKnown RBP13.17□□□□□ -0.3
SDC1-203ENST00000403076 H7BYZ3 331 aa13.16□□□□□ -0.3
SDC1-203ENST00000403076 DEFA6Q01524 100 aa13.16□□□□□ -0.3
SDC1-203ENST00000403076 TMEM256Q8N2U0 113 aa13.16□□□□□ -0.3
SDC1-203ENST00000403076 C15orf54Q8N8G6 183 aa13.16□□□□□ -0.3
SDC1-203ENST00000403076 CSNK1G2-AS1Q8NCQ2 148 aa13.16□□□□□ -0.3
SDC1-203ENST00000403076 IGHV1OR15-1A0A075B7D0 117 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 TMSB15BA0A087X1C1 80 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 TMEM189A5PLL7 270 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 C19orf71A6NCJ1 209 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 GATCO43716 136 aaKnown RBP13.15□□□□□ -0.3
SDC1-203ENST00000403076 SFRP2Q96HF1 295 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 RCHY1Q96PM5 261 aa13.15□□□□□ -0.3
SDC1-203ENST00000403076 ZNF705GA8MUZ8 300 aaPredicted RBP13.14□□□□□ -0.31
SDC1-203ENST00000403076 ATP6V1G1O75348 118 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 ANXA2RQ3ZCQ2 193 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 FAM231DQ6ZW35 169 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 Q6ZWC4 215 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 SVBPQ8N300 66 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 OR2D3Q8NGH3 330 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 OR10G8Q8NGN5 311 aa13.14□□□□□ -0.31
SDC1-203ENST00000403076 PYGO2Q9BRQ0 406 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms