RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 C2CD4CQ8TF44 421 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 C11orf52Q96A22 123 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 VGLL1Q99990 258 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 AGPAT4-IT1Q9H0P7 198 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 GNG13Q9P2W3 67 aa6.69□□□□□ -1.34
VPS53-203ENST00000401468 A0A1B0GV50 99 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 KLLNB2CW77 178 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 C11orf94C9JXX5 98 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 PEX7O00628 323 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 CRXO43186 299 aaPredicted RBP6.68□□□□□ -1.34
VPS53-203ENST00000401468 IFNA1P01562 189 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 ZNF705DP0CH99 300 aaPredicted RBP6.68□□□□□ -1.34
VPS53-203ENST00000401468 ZNF705BP0CI00 300 aaPredicted RBP6.68□□□□□ -1.34
VPS53-203ENST00000401468 APOC4P55056 127 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 GNG5P63218 68 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 MEF2BQ02080 365 aaPredicted RBP6.68□□□□□ -1.34
VPS53-203ENST00000401468 HIST1H1AQ02539 215 aaPredicted RBP6.68□□□□□ -1.34
VPS53-203ENST00000401468 DEFB135Q30KP9 77 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 ZNF506Q5JVG8 444 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 Q6ZWC4 215 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 COX8CQ7Z4L0 72 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 CYB561D1Q8N8Q1 229 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 CMTM2Q8TAZ6 248 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 CSTL1Q9H114 145 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 ZNF492Q9P255 531 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 VAX2Q9UIW0 290 aa6.68□□□□□ -1.34
VPS53-203ENST00000401468 RBFOX3A6NFN3 312 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 PDE6DO43924 150 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 AMBPP02760 352 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 ZNF138P52744 262 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 NUTF2P61970 127 aaKnown RBP6.67□□□□□ -1.34
VPS53-203ENST00000401468 ERCC8Q13216 396 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 CST9LP1Q5W188 147 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 GOLT1AQ6ZVE7 132 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 ZFAND2AQ8N6M9 145 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 OVOL2Q9BRP0 275 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 SLC35B3Q9H1N7 401 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 SMDT1Q9H4I9 107 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 MED9Q9NWA0 146 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 TP53TG1Q9Y2A0 90 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 ALMS1Q8TCU4 4167 aa6.67□□□□□ -1.34
VPS53-203ENST00000401468 TRAV8-1A0A0A6YYK1 113 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 A0A0J9YWU9 116 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 F6UZH7 168 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 TMEM250H0YL14 139 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 K7EQM0 130 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 CDKN1BP46527 198 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 TMEM183BQ1AE95 376 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 TMEM78Q5T7P6 136 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 OR4B1Q8NGF8 309 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 TVP23CQ96ET8 276 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 FMC1Q96HJ9 113 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 RARRES2Q99969 163 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 C1QTNF4Q9BXJ3 329 aa6.66□□□□□ -1.34
VPS53-203ENST00000401468 DEFB4AO15263 64 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 CA1P00915 261 aaPredicted RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 LTAP01374 205 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 S100A9P06702 114 aaKnown RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 PRB4P10163 310 aaPredicted RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 TSPOP30536 169 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 LEPP41159 167 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 FLI1Q01543 452 aaPredicted RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 SPINK13Q1W4C9 94 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 ZNF705AQ6ZN79 300 aaPredicted RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 Q86TA4 180 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 PCNPQ8WW12 178 aaKnown RBP6.65□□□□□ -1.34
VPS53-203ENST00000401468 RNF183Q96D59 192 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 IGF2BP2-AS1Q96M15 143 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 LINC00479Q96M42 142 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 C20orf144Q9BQM9 153 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 MLST8Q9BVC4 326 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 PSG8Q9UQ74 426 aa6.65□□□□□ -1.34
VPS53-203ENST00000401468 RAB19A4D1S5 217 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 CXorf65A6NEN9 183 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 M0R2Z0 102 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 ZNF324O75467 553 aaPredicted RBP6.64□□□□□ -1.35
VPS53-203ENST00000401468 IGKV3-20P01619 116 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 RBMY1A1P0DJD3 496 aaKnown RBP6.64□□□□□ -1.35
VPS53-203ENST00000401468 RBMY1CP0DJD4 496 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 TAS2R60P59551 318 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 RAB14P61106 215 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 RBMY1FQ15415 496 aaKnown RBP6.64□□□□□ -1.35
VPS53-203ENST00000401468 PRR9Q5T870 116 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 GFI1BQ5VTD9 330 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 Q6AWC8 147 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 C1orf158Q8N1D5 194 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 Q8TAT8 98 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 SMIM12Q96EX1 92 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 NEU1Q99519 415 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 LINC00467Q9BRT7 94 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 RPH3ALQ9UNE2 315 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 ZFP30Q9Y2G7 519 aa6.64□□□□□ -1.35
VPS53-203ENST00000401468 TRBV20OR9-2A0A075B6H5 130 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 IGLV2-8P01709 118 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 SRP19P09132 144 aaKnown RBP6.63□□□□□ -1.35
VPS53-203ENST00000401468 RPL35P42766 123 aaKnown RBP6.63□□□□□ -1.35
VPS53-203ENST00000401468 ANKRD39Q53RE8 183 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 TOR2AQ5JU69 321 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 SAPCD1Q5SSQ6 148 aa6.63□□□□□ -1.35
VPS53-203ENST00000401468 TMEM256Q8N2U0 113 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms