RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 C17orf77Q96MU5 243 aa14.39□□□□□ -0.11
COL18A1-204ENST00000400337 ANAPC13Q9BS18 74 aa14.39□□□□□ -0.11
COL18A1-204ENST00000400337 NDUFS6O75380 124 aaKnown RBP14.38□□□□□ -0.11
COL18A1-204ENST00000400337 IGHV7-4-1A0A0J9YVY3 117 aa14.38□□□□□ -0.11
COL18A1-204ENST00000400337 A0A1W2PNU3 283 aaPredicted RBP14.38□□□□□ -0.11
COL18A1-204ENST00000400337 MRPL52Q86TS9 123 aaKnown RBP14.38□□□□□ -0.11
COL18A1-204ENST00000400337 DLX4Q92988 240 aaPredicted RBP14.38□□□□□ -0.11
COL18A1-204ENST00000400337 SDHAF1A6NFY7 115 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 EREGO14944 169 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 IGF2-ASQ6U949 168 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 UBE2V1Q13404 147 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 SS18Q15532 418 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 CD5LO43866 347 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 PTPRQQ9UMZ3 2332 aa14.37□□□□□ -0.11
COL18A1-204ENST00000400337 ZNF625Q96I27 306 aaPredicted RBP14.36□□□□□ -0.11
COL18A1-204ENST00000400337 AZU1P20160 251 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 HLA-DMBP28068 263 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 Q6ZSR3 168 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 DEFB112Q30KQ8 113 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 I3L3M4 83 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 IGHV4-59P01825 116 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 C20orf144Q9BQM9 153 aa14.36□□□□□ -0.11
COL18A1-204ENST00000400337 ELANEP08246 267 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 C2orf82Q6UX34 121 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 NEGR1Q7Z3B1 354 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 GAGE12BA1L429 117 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 GAGE7O76087 117 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 GAGE12FP0CL80 117 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 GAGE12GP0CL81 117 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 GAGE12IP0CL82 117 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 LEPROTO15243 131 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 LYPD6Q86Y78 171 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 OR11H6Q8NGC7 330 aa14.35□□□□□ -0.11
COL18A1-204ENST00000400337 F5H768 121 aa14.34□□□□□ -0.11
COL18A1-204ENST00000400337 IGHV1-24A0A0C4DH33 117 aa14.34□□□□□ -0.11
COL18A1-204ENST00000400337 Q6ZWC4 215 aa14.34□□□□□ -0.11
COL18A1-204ENST00000400337 PLXNB3Q9ULL4 1909 aa14.34□□□□□ -0.11
COL18A1-204ENST00000400337 IGHV3-38A0A0C4DH36 116 aa14.33□□□□□ -0.11
COL18A1-204ENST00000400337 K7EN84 100 aa14.33□□□□□ -0.11
COL18A1-204ENST00000400337 VWC2Q2TAL6 325 aa14.33□□□□□ -0.11
COL18A1-204ENST00000400337 IGHV4-61A0A0C4DH41 118 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 NPYP01303 97 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 TMEM141Q96I45 108 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 SIGLEC8Q9NYZ4 499 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 DAD1P61803 113 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 ZNRF2Q8NHG8 242 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 KIF26AQ9ULI4 1882 aaPredicted RBP14.33□□□□□ -0.12
COL18A1-204ENST00000400337 SPRY4Q9C004 299 aa14.33□□□□□ -0.12
COL18A1-204ENST00000400337 F6UB75 175 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 PMVKQ15126 192 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 LTAP01374 205 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 GAGE2BQ13066 116 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 GAGE2EQ4V326 116 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 GAGE2DQ9UEU5 116 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 CENPVL3A0A0U1RRI6 287 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 PSCAO43653 123 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 SPG11Q96JI7 2443 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 DYNAPQ8N1N2 210 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 TRBV25-1A0A075B6N4 114 aa14.32□□□□□ -0.12
COL18A1-204ENST00000400337 ACACBO00763 2458 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 TRAV8-3A0A0A6YYJ7 113 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 RITA1Q96K30 269 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 SEM1Q6ZVN7 128 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 COX11Q9Y6N1 276 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 H3BUA1 57 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 VPREB3Q9UKI3 123 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 LYPD6BQ8NI32 183 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 LAMTOR3Q9UHA4 124 aa14.31□□□□□ -0.12
COL18A1-204ENST00000400337 TECTAO75443 2155 aa14.3□□□□□ -0.12
COL18A1-204ENST00000400337 LGALS1P09382 135 aaKnown RBP14.3□□□□□ -0.12
COL18A1-204ENST00000400337 AGPAT4-IT1Q9H0P7 198 aa14.3□□□□□ -0.12
COL18A1-204ENST00000400337 SMIM2Q9BVW6 85 aa14.29□□□□□ -0.12
COL18A1-204ENST00000400337 IGHV4-30-2A0A087WSY4 118 aa14.29□□□□□ -0.12
COL18A1-204ENST00000400337 WISP2O76076 250 aa14.29□□□□□ -0.12
COL18A1-204ENST00000400337 VWC2LB2RUY7 222 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 IGHV4-38-2P0DP08 117 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 OCIAD2Q56VL3 154 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 IGHV7-81A0A0B4J1V7 117 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 ZFAND6Q6FIF0 208 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 NOTCH2Q04721 2471 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 PRB1P04280 392 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 IGLC2P0DOY2 106 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 IGLC3P0DOY3 106 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 SNHG12Q9BXW3 62 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 HOXD3P31249 432 aaPredicted RBP14.28□□□□□ -0.12
COL18A1-204ENST00000400337 ADORA2A-AS1P86434 159 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 ATP6V0BQ99437 205 aa14.28□□□□□ -0.12
COL18A1-204ENST00000400337 FOXE3Q13461 319 aa14.27□□□□□ -0.12
COL18A1-204ENST00000400337 C9JAW5 83 aa14.27□□□□□ -0.12
COL18A1-204ENST00000400337 EGR2P11161 476 aaPredicted RBP14.27□□□□□ -0.12
COL18A1-204ENST00000400337 ADAMTSL5Q6ZMM2 481 aa14.27□□□□□ -0.12
COL18A1-204ENST00000400337 HLA-DRB4P13762 266 aa14.27□□□□□ -0.13
COL18A1-204ENST00000400337 DEFB136Q30KP8 78 aa14.27□□□□□ -0.13
COL18A1-204ENST00000400337 MRPL35Q9NZE8 188 aaKnown RBP14.27□□□□□ -0.13
COL18A1-204ENST00000400337 HLA-DRB4X5D2U9 266 aa14.27□□□□□ -0.13
COL18A1-204ENST00000400337 GNRH2O43555 120 aa14.26□□□□□ -0.13
COL18A1-204ENST00000400337 GAGE6Q13070 117 aa14.26□□□□□ -0.13
COL18A1-204ENST00000400337 HIST1H4AP62805 103 aaKnown RBP14.26□□□□□ -0.13
COL18A1-204ENST00000400337 NPBQ8NG41 125 aa14.26□□□□□ -0.13
COL18A1-204ENST00000400337 TMEM243Q9BU79 118 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms