RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 IGHV1OR15-1A0A075B7D0 117 aa11.23□□□□□ -0.61
COL4A3-202ENST00000396578 MST1LQ2TV78 715 aa11.23□□□□□ -0.61
COL4A3-202ENST00000396578 NDUFA4L2Q9NRX3 87 aa11.23□□□□□ -0.61
COL4A3-202ENST00000396578 CDKN1BP46527 198 aa11.23□□□□□ -0.61
COL4A3-202ENST00000396578 FREM1Q5H8C1 2179 aa11.23□□□□□ -0.61
COL4A3-202ENST00000396578 NXPH4O95158 308 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 LYPD2Q6UXB3 125 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 J3QQQ9 107 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 C15orf53Q8NAA6 179 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 NDUFC2O95298 119 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 FAM231DQ6ZW35 169 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 NLRC5Q86WI3 1866 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 C9JQL5 133 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 RMI2Q96E14 147 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 ZNF581Q9P0T4 197 aa11.22□□□□□ -0.61
COL4A3-202ENST00000396578 ZNRF2Q8NHG8 242 aa11.21□□□□□ -0.61
COL4A3-202ENST00000396578 C1orf43Q9BWL3 253 aa11.21□□□□□ -0.61
COL4A3-202ENST00000396578 C5orf63A6NC05 138 aa11.21□□□□□ -0.61
COL4A3-202ENST00000396578 PRSS29PA6NIE9 313 aa11.21□□□□□ -0.61
COL4A3-202ENST00000396578 LINC01619G3V211 115 aa11.21□□□□□ -0.62
COL4A3-202ENST00000396578 ATP6V0E1O15342 81 aa11.21□□□□□ -0.62
COL4A3-202ENST00000396578 IGHG2P01859 326 aa11.21□□□□□ -0.62
COL4A3-202ENST00000396578 ZNF134P52741 427 aa11.21□□□□□ -0.62
COL4A3-202ENST00000396578 FAM110DQ8TAY7 271 aaPredicted RBP11.21□□□□□ -0.62
COL4A3-202ENST00000396578 ORMDL1Q9P0S3 153 aa11.21□□□□□ -0.62
COL4A3-202ENST00000396578 ACYP1P07311 99 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 CGB3P0DN86 165 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 APOC4P55056 127 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 PRR25Q96S07 402 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 TMEM14CQ9P0S9 112 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 SMIM2Q9BVW6 85 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 C12orf74Q32Q52 190 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 RNF144BQ7Z419 303 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 IGHV3-38A0A0C4DH36 116 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 GATA3P23771 443 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 VWC2Q2TAL6 325 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 VWCEQ96DN2 955 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 PYGO2Q9BRQ0 406 aa11.2□□□□□ -0.62
COL4A3-202ENST00000396578 NBASA2RRP1 2371 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 C10orf91Q5T1B1 145 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 DENND4CQ5VZ89 1909 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 CSRP1P21291 193 aaKnown RBP11.19□□□□□ -0.62
COL4A3-202ENST00000396578 C20orf78Q9BR46 151 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 COL8A2P25067 703 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 ZNF833PQ6ZTB9 187 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 BPESC1Q9GZL8 116 aa11.19□□□□□ -0.62
COL4A3-202ENST00000396578 TRAV12-2A0A075B6T6 113 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 IGHV2-5P01817 119 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 ANGP03950 147 aaKnown RBP11.18□□□□□ -0.62
COL4A3-202ENST00000396578 BAALC-AS2P0C853 105 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 ANXA2RQ3ZCQ2 193 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 MESP1Q9BRJ9 268 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 K7EMI3 77 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 ZC2HC1AQ96GY0 325 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 SS18L2Q9UHA2 77 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 B5MCH6 92 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 CRYGCP07315 174 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 NPYP01303 97 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 UBE2E1P51965 193 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 CGB7P0DN87 165 aa11.18□□□□□ -0.62
COL4A3-202ENST00000396578 MBD3L4A6NDZ8 208 aaPredicted RBP11.17□□□□□ -0.62
COL4A3-202ENST00000396578 MBD3L3A6NE82 208 aaPredicted RBP11.17□□□□□ -0.62
COL4A3-202ENST00000396578 MBD3L5A6NJ08 208 aaPredicted RBP11.17□□□□□ -0.62
COL4A3-202ENST00000396578 NDUFS7O75251 213 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 MBD3L2Q8NHZ7 208 aaPredicted RBP11.17□□□□□ -0.62
COL4A3-202ENST00000396578 CLPSL1A2RUU4 121 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 C22orf46C9J442 243 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 CLPSP04118 112 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 EML5Q05BV3 1969 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 H3BRN7 92 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 CHKB-CPT1BH3BT56 60 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 RS1O15537 224 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 LINC01545Q5VT33 79 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 TEX36Q5VZQ5 186 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 LHBP01229 141 aa11.17□□□□□ -0.62
COL4A3-202ENST00000396578 NCOA6Q14686 2063 aaPredicted RBP11.17□□□□□ -0.62
COL4A3-202ENST00000396578 NDUFA4O00483 81 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 AMTNQ6UX39 209 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 C3orf56Q8N813 242 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 DEFB105AQ8NG35 78 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 F6UB75 175 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 ZNRD1Q9P1U0 126 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 FUSP35637 526 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL4A3-202ENST00000396578 DKK2Q9UBU2 259 aa11.16□□□□□ -0.62
COL4A3-202ENST00000396578 NTN5Q8WTR8 489 aaPredicted RBP11.16□□□□□ -0.62
COL4A3-202ENST00000396578 TMEM105Q8N8V8 129 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 CLPSL2Q6UWE3 100 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 RHOHQ15669 191 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 RUSC1-AS1Q66K80 236 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 MDS2Q8NDY4 140 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 Q0VFX4 171 aa11.15□□□□□ -0.62
COL4A3-202ENST00000396578 PCDH15Q96QU1 1955 aa11.15□□□□□ -0.63
COL4A3-202ENST00000396578 RNASE13Q5GAN3 156 aaKnown RBP11.14□□□□□ -0.63
COL4A3-202ENST00000396578 IGF2BP2-AS1Q96M15 143 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 MALRD1Q5VYJ5 2156 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 LY6HO94772 140 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 MSMBP08118 114 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 CFC1BP0CG36 223 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 CFC1P0CG37 223 aa11.14□□□□□ -0.63
COL4A3-202ENST00000396578 ZNF493Q6ZR52 646 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms