RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MTORP42345 2549 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 PRAC2D3DTV9 90 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 J3QLI3 93 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 LINC01559Q495D7 138 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 RNF182Q8N6D2 247 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 TMEM70Q9BUB7 260 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 M0R143 59 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 CRXO43186 299 aaPredicted RBP16.49■□□□□ 0.23
TRIM54-202ENST00000380075 SPATA45Q537H7 98 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 FAM104BQ5XKR9 115 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 C9orf139Q6ZV77 190 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 IL17RELQ6ZVW7 336 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 KLHDC1Q8N7A1 406 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 U3KQK5 164 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 HIVEP2P31629 2446 aa16.49■□□□□ 0.23
TRIM54-202ENST00000380075 A0A0G2JLM5 398 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 C20orf202A1L168 122 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 ZNF207O43670 478 aaKnown RBP16.48■□□□□ 0.23
TRIM54-202ENST00000380075 LEPROTL1O95214 131 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 HIST1H1AQ02539 215 aaPredicted RBP16.48■□□□□ 0.23
TRIM54-202ENST00000380075 ERCC8Q13216 396 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 TMEM78Q5T7P6 136 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 CNFNQ9BYD5 112 aa16.48■□□□□ 0.23
TRIM54-202ENST00000380075 INAFM1C9JVW0 142 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 ZNF138P52744 262 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 ZNF705AQ6ZN79 300 aaPredicted RBP16.47■□□□□ 0.23
TRIM54-202ENST00000380075 C9orf47Q6ZRZ4 202 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 IGHV3OR16-13A0A075B7E8 117 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 IGHV3-74A0A0B4J1X5 117 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 M0QZ24 198 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 ORM1P02763 201 aa16.47■□□□□ 0.23
TRIM54-202ENST00000380075 IGLV1-40P01703 118 aa16.46■□□□□ 0.23
TRIM54-202ENST00000380075 AGPAT4-IT1Q9H0P7 198 aa16.46■□□□□ 0.23
TRIM54-202ENST00000380075 HSPB8Q9UJY1 196 aa16.46■□□□□ 0.23
TRIM54-202ENST00000380075 IGHV3-49A0A0A0MS15 119 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 TMEM213A2RRL7 107 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 C16orf92Q96LL3 132 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 AP5S1Q9NUS5 200 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 TMEM160Q9NX00 188 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 LENEPQ9Y5L5 61 aa16.46■□□□□ 0.22
TRIM54-202ENST00000380075 ZFHX3Q15911 3703 aa16.45■□□□□ 0.22
TRIM54-202ENST00000380075 ORMDL3Q8N138 153 aa16.45■□□□□ 0.22
TRIM54-202ENST00000380075 SNHG12Q9BXW3 62 aa16.45■□□□□ 0.22
TRIM54-202ENST00000380075 PF4V1P10720 104 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 BLCAPP62952 87 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 FA2HQ7L5A8 372 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 UQCR10Q9UDW1 63 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 NSD1Q96L73 2696 aaPredicted RBP16.44■□□□□ 0.22
TRIM54-202ENST00000380075 TRAV9-2A0A087WT02 112 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 EREGO14944 169 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 CFHR3Q02985 330 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 PRSS3P2Q8NHM4 247 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 TMEM191AQ9H0A3 160 aa16.44■□□□□ 0.22
TRIM54-202ENST00000380075 ZMAT5Q9UDW3 170 aaKnown RBP16.44■□□□□ 0.22
TRIM54-202ENST00000380075 SYS1-DBNDD2H3BUS1 97 aa16.43■□□□□ 0.22
TRIM54-202ENST00000380075 TWIST1Q15672 202 aa16.43■□□□□ 0.22
TRIM54-202ENST00000380075 ZNF575Q86XF7 245 aa16.43■□□□□ 0.22
TRIM54-202ENST00000380075 NPFFR1Q9GZQ6 430 aa16.43■□□□□ 0.22
TRIM54-202ENST00000380075 D6R8Y8 96 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 TRBV12-3P01733 135 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 IGLC3P0DOY3 106 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 UNQ9165/PRO28630Q6UXU0 137 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 AMN1Q8IY45 258 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 OR4X2Q8NGF9 303 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 PRELID3AQ96N28 172 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 CSN3P07498 182 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 MAP1LC3CQ9BXW4 147 aa16.42■□□□□ 0.22
TRIM54-202ENST00000380075 FN1P02751 2386 aaKnown RBP16.41■□□□□ 0.22
TRIM54-202ENST00000380075 MXRA5Q9NR99 2828 aa16.41■□□□□ 0.22
TRIM54-202ENST00000380075 A0A1B0GV90 55 aa16.41■□□□□ 0.22
TRIM54-202ENST00000380075 MRPL51Q4U2R6 128 aaKnown RBP16.41■□□□□ 0.22
TRIM54-202ENST00000380075 PET117Q6UWS5 81 aa16.41■□□□□ 0.22
TRIM54-202ENST00000380075 KLK15Q9H2R5 256 aa16.41■□□□□ 0.22
TRIM54-202ENST00000380075 CUBNO60494 3623 aa16.41■□□□□ 0.22
TRIM54-202ENST00000380075 FSHBP01225 129 aa16.4■□□□□ 0.22
TRIM54-202ENST00000380075 OR10AG1Q8NH19 301 aa16.4■□□□□ 0.22
TRIM54-202ENST00000380075 OVOL1O14753 267 aa16.4■□□□□ 0.22
TRIM54-202ENST00000380075 PPBPP02775 128 aa16.4■□□□□ 0.22
TRIM54-202ENST00000380075 LINC00477Q96M19 166 aa16.4■□□□□ 0.22
TRIM54-202ENST00000380075 TMEM89A2RUT3 159 aa16.39■□□□□ 0.21
TRIM54-202ENST00000380075 IGHV3-11P01762 117 aa16.39■□□□□ 0.21
TRIM54-202ENST00000380075 NIPBLQ6KC79 2804 aaeCLIP16.39■□□□□ 0.21
TRIM54-202ENST00000380075 SOCS3O14543 225 aa16.38■□□□□ 0.21
TRIM54-202ENST00000380075 Q6ZS46 218 aa16.38■□□□□ 0.21
TRIM54-202ENST00000380075 ZNF738Q8NE65 137 aa16.38■□□□□ 0.21
TRIM54-202ENST00000380075 LAMTOR2Q9Y2Q5 125 aa16.38■□□□□ 0.21
TRIM54-202ENST00000380075 ATOH7Q8N100 152 aa16.38■□□□□ 0.21
TRIM54-202ENST00000380075 IGKV3D-20A0A0C4DH25 116 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 OR4C46A6NHA9 309 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 K7EMT4 169 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 CKS2P33552 79 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 DEFB112Q30KQ8 113 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 GPHB5Q86YW7 130 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 SIGLEC8Q9NYZ4 499 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 IGHV7-4-1A0A0J9YVY3 117 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 CRLF1O75462 422 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 LINC00173Q6ZV60 143 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 SPATA12Q7Z6I5 190 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 TEX29Q8N6K0 151 aa16.37■□□□□ 0.21
TRIM54-202ENST00000380075 OR10J6PQ8NGY7 276 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms