RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RPL11P62913 178 aaKnown RBP9.38□□□□□ -0.91
CLIP3-201ENST00000360535 COL25A1Q9BXS0 654 aaPredicted RBP9.38□□□□□ -0.91
CLIP3-201ENST00000360535 A0A0G2JLM5 398 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 ODF3BA8MYP8 253 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 TMEM238C9JI98 176 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 K7ERJ3 54 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 DTX2Q86UW9 622 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 Q8N9W7 124 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 RNF185Q96GF1 192 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 PIEZO1Q92508 2521 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 RPS20P60866 119 aaKnown RBP9.38□□□□□ -0.91
CLIP3-201ENST00000360535 SEC11AP67812 179 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 SPANXN1Q5VSR9 72 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 BOD1L2Q8IYS8 172 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 AGPAT4-IT1Q9H0P7 198 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 C11orf21Q9P2W6 132 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 MSRB2Q9Y3D2 182 aa9.38□□□□□ -0.91
CLIP3-201ENST00000360535 U3KQK5 164 aa9.37□□□□□ -0.91
CLIP3-201ENST00000360535 M0R1W7 72 aa9.37□□□□□ -0.91
CLIP3-201ENST00000360535 IGLC6P0CF74 106 aa9.37□□□□□ -0.91
CLIP3-201ENST00000360535 TMEM78Q5T7P6 136 aa9.37□□□□□ -0.91
CLIP3-201ENST00000360535 ADORA2A-AS1P86434 159 aa9.37□□□□□ -0.91
CLIP3-201ENST00000360535 VPS13CQ709C8 3753 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 TRAV40A0A0B4J280 105 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 IGKV3D-20A0A0C4DH25 116 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 H3BVH4 76 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 IGF1P05019 195 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 SAA4P35542 130 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 EFNA4P52798 201 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 ZC2HC1BQ5TFG8 222 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 GATD1Q8NB37 220 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 GLMPQ8WWB7 406 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 RAXQ9Y2V3 346 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 M0R381 172 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 BUB3O43684 328 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 HSD52Q0P140 79 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 GTF2H5Q6ZYL4 71 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 ZNF575Q86XF7 245 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 OR2K2Q8NGT1 345 aa9.36□□□□□ -0.91
CLIP3-201ENST00000360535 A0A1W2PPR1 153 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 TMEM8BA6NDV4 472 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 C9orf118A6NHY6 69 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 C16orf92Q96LL3 132 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 SPCS1Q9Y6A9 102 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 FXYD2P54710 66 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 Q5PR19 223 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 RPL24P83731 157 aaKnown RBP9.35□□□□□ -0.91
CLIP3-201ENST00000360535 OR1N2Q8NGR9 330 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 WFDC12Q8WWY7 111 aa9.35□□□□□ -0.91
CLIP3-201ENST00000360535 NHP2Q9NX24 153 aaKnown RBP9.35□□□□□ -0.91
CLIP3-201ENST00000360535 IGKCP01834 107 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 SMIM17P0DL12 118 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 ZNF502Q8TBZ5 544 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 H3BRM9 83 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 IGHV3-11P01762 117 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 ODF1Q14990 250 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 ADAMTSL5Q6ZMM2 481 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 CCDC140Q96MF4 163 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 METTL26Q96S19 204 aa9.34□□□□□ -0.91
CLIP3-201ENST00000360535 BRD3OSQ6XYD6 125 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 OR9G4Q8NGQ1 327 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 MRPL35Q9NZE8 188 aaKnown RBP9.33□□□□□ -0.92
CLIP3-201ENST00000360535 S100A4P26447 101 aaKnown RBP9.33□□□□□ -0.92
CLIP3-201ENST00000360535 LCNL1Q6ZST4 164 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 C8orf86Q6ZUL3 223 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 MYOZ3Q8TDC0 251 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 BPESC1Q9GZL8 116 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 ZFAND3Q9H8U3 227 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 SRD5A1P18405 259 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 PAX8Q06710 450 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 LY6EQ16553 131 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 Q8N6K4 173 aa9.33□□□□□ -0.92
CLIP3-201ENST00000360535 NXT2Q9NPJ8 142 aaKnown RBP9.33□□□□□ -0.92
CLIP3-201ENST00000360535 MTURNQ8N3F0 131 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 OR4X2Q8NGF9 303 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 MGPP08493 103 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 SMIM13P0DJ93 91 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 CHAC1Q9BUX1 264 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 CLPSL1A2RUU4 121 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 SAMD5Q5TGI4 173 aa9.32□□□□□ -0.92
CLIP3-201ENST00000360535 FAM110DQ8TAY7 271 aaPredicted RBP9.32□□□□□ -0.92
CLIP3-201ENST00000360535 ZNF48Q96MX3 618 aaPredicted RBP9.32□□□□□ -0.92
CLIP3-201ENST00000360535 F6UB75 175 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 DPM2O94777 84 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 FABP2P12104 132 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 EEF1AKMT3Q96AZ1 226 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 HHLA3Q9XRX5 114 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 NOTCH3Q9UM47 2321 aa9.31□□□□□ -0.92
CLIP3-201ENST00000360535 TRBV25-1A0A075B6N4 114 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 TRAV8-2A0A0B4J237 113 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 TRBV12-3P01733 135 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 PRR9Q5T870 116 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 MINOS1Q5TGZ0 78 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 MINOS1-NBL1R4GNA1 71 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 A0A1W2PPM0 123 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 K7EP34 96 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 ATP5G2Q06055 141 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 LY6DQ14210 128 aa9.3□□□□□ -0.92
CLIP3-201ENST00000360535 LINC01559Q495D7 138 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms