RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 NDFIP1Q9BT67 221 aa13.91□□□□□ -0.18
CHMP4A-201ENST00000347519 TUBA4BQ9H853 241 aa13.91□□□□□ -0.18
CHMP4A-201ENST00000347519 TRBV7-9A0A0J9YWB2 115 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 RPL23P62829 140 aaKnown RBP13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 OR5I1Q13606 314 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 TMEM241Q24JQ0 296 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 GFI1BQ5VTD9 330 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 COX8CQ7Z4L0 72 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 SEC11CQ9BY50 192 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 SDF2L1Q9HCN8 221 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 NAT8Q9UHE5 227 aa13.9□□□□□ -0.18
CHMP4A-201ENST00000347519 LOC102724200A0A096LPH7 203 aaPredicted RBP13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 GCGP01275 180 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 RBMY1A1P0DJD3 496 aaKnown RBP13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 RBMY1CP0DJD4 496 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 MGST1P10620 155 aaKnown RBP13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 RNASE4P34096 147 aaKnown RBP13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 CDKN1BP46527 198 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 RBMY1FQ15415 496 aaKnown RBP13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 SMUG1Q53HV7 270 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 LINC01551Q86U37 167 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 XCL2Q9UBD3 114 aa13.89□□□□□ -0.19
CHMP4A-201ENST00000347519 GPX1P07203 203 aa13.88□□□□□ -0.19
CHMP4A-201ENST00000347519 LY96Q9Y6Y9 160 aa13.88□□□□□ -0.19
CHMP4A-201ENST00000347519 A8MZ25 164 aa13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 TSPOP30536 169 aa13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 PRR27Q6MZM9 219 aa13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 NIPSNAP3BQ9BS92 247 aa13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 CSTL1Q9H114 145 aa13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 CARHSP1Q9Y2V2 147 aaKnown RBP13.87□□□□□ -0.19
CHMP4A-201ENST00000347519 TRAV12-3A0A0B4J271 114 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 C7orf71A4D174 169 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 SH2D1AO60880 128 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 CA1P00915 261 aaPredicted RBP13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 ADIRFQ15847 76 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 MORN3Q6PF18 240 aaPredicted RBP13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 SMIM12Q96EX1 92 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 C11orf21Q9P2W6 132 aa13.86□□□□□ -0.19
CHMP4A-201ENST00000347519 ZNF324O75467 553 aaPredicted RBP13.85□□□□□ -0.19
CHMP4A-201ENST00000347519 FRMD6-AS1P0C7T7 363 aa13.85□□□□□ -0.19
CHMP4A-201ENST00000347519 KRBOX1C9JBD0 128 aa13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 NUTF2P61970 127 aaKnown RBP13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 Q6AWC8 147 aa13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 C1orf158Q8N1D5 194 aa13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 CSNK1G2-AS1Q8NCQ2 148 aa13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 ISOC2Q96AB3 205 aa13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 RNASE7Q9H1E1 156 aaKnown RBP13.84□□□□□ -0.19
CHMP4A-201ENST00000347519 C19orf71A6NCJ1 209 aa13.83□□□□□ -0.19
CHMP4A-201ENST00000347519 AMBPP02760 352 aa13.83□□□□□ -0.19
CHMP4A-201ENST00000347519 KIR2DL5BA0A0G2JN68 375 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 KIR2DL5BA0A0G2JPC4 375 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 PRM2P04554 102 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 PFN1P07737 140 aaKnown RBP13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 DEFA6Q01524 100 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 FAM162BQ5T6X4 162 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 KIR2DL5AQ8N109 375 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 KIR2DL5BQ8NHK3 375 aa13.83□□□□□ -0.2
CHMP4A-201ENST00000347519 DNAH9Q9NYC9 4486 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 TRAV21A0A0B4J279 112 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 FABP5P3A8MUU1 101 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 ATP6V1G1O75348 118 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 INSP01308 110 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 APOC3P02656 99 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 APOC4P55056 127 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 MUC21Q5SSG8 566 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 ZNF575Q86XF7 245 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 NUDT10Q8NFP7 164 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 NUDT11Q96G61 164 aa13.82□□□□□ -0.2
CHMP4A-201ENST00000347519 RPL19P84098 196 aaKnown RBP13.81□□□□□ -0.2
CHMP4A-201ENST00000347519 DEFB121Q5J5C9 76 aa13.81□□□□□ -0.2
CHMP4A-201ENST00000347519 IGKV3D-20A0A0C4DH25 116 aa13.8□□□□□ -0.2
CHMP4A-201ENST00000347519 M0R036 132 aa13.8□□□□□ -0.2
CHMP4A-201ENST00000347519 PNRC1Q12796 327 aaPredicted RBP13.8□□□□□ -0.2
CHMP4A-201ENST00000347519 C1QTNF4Q9BXJ3 329 aa13.8□□□□□ -0.2
CHMP4A-201ENST00000347519 NAGKQ9UJ70 344 aa13.8□□□□□ -0.2
CHMP4A-201ENST00000347519 HUWE1Q7Z6Z7 4374 aaKnown RBP13.79□□□□□ -0.2
CHMP4A-201ENST00000347519 DEFB135Q30KP9 77 aa13.79□□□□□ -0.2
CHMP4A-201ENST00000347519 ANXA2RQ3ZCQ2 193 aa13.79□□□□□ -0.2
CHMP4A-201ENST00000347519 FAM231DQ6ZW35 169 aa13.79□□□□□ -0.2
CHMP4A-201ENST00000347519 BIN3Q9NQY0 253 aa13.79□□□□□ -0.2
CHMP4A-201ENST00000347519 IGHV3OR16-12A0A075B7B8 117 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 TMSB15BA0A087X1C1 80 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 ERVFC1-1P60608 527 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 IBA57Q5T440 356 aaKnown RBP13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 CLRN3Q8NCR9 226 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 DAZAP1Q96EP5 407 aaKnown RBP13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 SFRP2Q96HF1 295 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 LINC01587Q99440 93 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 C20orf144Q9BQM9 153 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 OSTCQ9NRP0 149 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 TP53TG3Q9ULZ0 132 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 TGP01266 2768 aa13.78□□□□□ -0.2
CHMP4A-201ENST00000347519 UBE2CO00762 179 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 ORM1P02763 201 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 RNF212Q495C1 297 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 ATRAIDQ6UW56 229 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 ZNF705AQ6ZN79 300 aaPredicted RBP13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 SBSPONQ8IVN8 264 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 MRAPQ8TCY5 172 aa13.77□□□□□ -0.21
CHMP4A-201ENST00000347519 RETNQ9HD89 108 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms