RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 IGHG2P01859 326 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 LINC01545Q5VT33 79 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 CYB5R2Q6BCY4 276 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 LCNL1Q6ZST4 164 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 GPHB5Q86YW7 130 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 TMEM191AQ9H0A3 160 aa11.8□□□□□ -0.52
UPF3B-202ENST00000345865 ZANQ9Y493 2812 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 IGHV3-11P01762 117 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 MSMBP08118 114 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 CKS2P33552 79 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 COL5A1-AS1Q5SY13 56 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 PRSS57Q6UWY2 283 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 ATP6V0BQ99437 205 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 TMEM208Q9BTX3 173 aa11.79□□□□□ -0.52
UPF3B-202ENST00000345865 HINT1P49773 126 aaPredicted RBP11.78□□□□□ -0.52
UPF3B-202ENST00000345865 ST20Q9HBF5 79 aa11.78□□□□□ -0.52
UPF3B-202ENST00000345865 FOXE3Q13461 319 aa11.78□□□□□ -0.52
UPF3B-202ENST00000345865 TMEM78Q5T7P6 136 aa11.78□□□□□ -0.52
UPF3B-202ENST00000345865 C9orf47Q6ZRZ4 202 aa11.78□□□□□ -0.52
UPF3B-202ENST00000345865 MRPL53Q96EL3 112 aaKnown RBP11.78□□□□□ -0.52
UPF3B-202ENST00000345865 C16orf92Q96LL3 132 aa11.77□□□□□ -0.52
UPF3B-202ENST00000345865 ZFYVE26Q68DK2 2539 aa11.77□□□□□ -0.53
UPF3B-202ENST00000345865 DEFB1P60022 68 aa11.77□□□□□ -0.53
UPF3B-202ENST00000345865 PRR9Q5T870 116 aa11.77□□□□□ -0.53
UPF3B-202ENST00000345865 HIF1ANQ9NWT6 349 aa11.77□□□□□ -0.53
UPF3B-202ENST00000345865 HIST1H1AQ02539 215 aaPredicted RBP11.76□□□□□ -0.53
UPF3B-202ENST00000345865 IGHV7-4-1A0A0J9YVY3 117 aa11.76□□□□□ -0.53
UPF3B-202ENST00000345865 GATA1P15976 413 aaPredicted RBP11.76□□□□□ -0.53
UPF3B-202ENST00000345865 USP9YO00507 2555 aaPredicted RBP11.75□□□□□ -0.53
UPF3B-202ENST00000345865 CENPEQ02224 2701 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 NDUFA4O00483 81 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 DLEU1O43261 78 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 OR8A1Q8NGG7 326 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 SCRT2Q9NQ03 307 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 SELENOKQ9Y6D0 94 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 POLQO75417 2590 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 PF4V1P10720 104 aa11.75□□□□□ -0.53
UPF3B-202ENST00000345865 SOCS3O14543 225 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 BRI3O95415 125 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 NPSP0C0P6 89 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 Q6ZVH6 145 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 PPP1R14DQ9NXH3 145 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 TCF21O43680 179 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 EVI2AP22794 236 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 C9orf139Q6ZV77 190 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 OR4X2Q8NGF9 303 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 USMG5Q96IX5 58 aa11.74□□□□□ -0.53
UPF3B-202ENST00000345865 IGLV1-40P01703 118 aa11.73□□□□□ -0.53
UPF3B-202ENST00000345865 ZNF738Q8NE65 137 aa11.73□□□□□ -0.53
UPF3B-202ENST00000345865 USP24Q9UPU5 2620 aa11.73□□□□□ -0.53
UPF3B-202ENST00000345865 B4DSR2 109 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 HSBP1L1C9JCN9 74 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 H3BUA1 57 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 J3KRW8 73 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 HBDP02042 147 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 EDN2P20800 178 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 TMEM95Q3KNT9 176 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 TNFRSF6BO95407 300 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 CFHR3Q02985 330 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 SLC25A34Q6PIV7 304 aa11.72□□□□□ -0.53
UPF3B-202ENST00000345865 ANKRD17O75179 2603 aaKnown RBP11.72□□□□□ -0.53
UPF3B-202ENST00000345865 TM4SF20Q53R12 229 aa11.71□□□□□ -0.53
UPF3B-202ENST00000345865 WFDC3Q8IUB2 231 aa11.71□□□□□ -0.53
UPF3B-202ENST00000345865 NPFFR1Q9GZQ6 430 aa11.71□□□□□ -0.53
UPF3B-202ENST00000345865 IGKV3-7A0A075B6H7 116 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 PPBPP02775 128 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 MPV17L2Q567V2 206 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 ZFAND2AQ8N6M9 145 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 SPOCK3Q9BQ16 436 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 MS4A6AQ9H2W1 248 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 MAP1LC3AQ9H492 121 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 FAM208BQ5VWN6 2430 aa11.71□□□□□ -0.54
UPF3B-202ENST00000345865 F6UB75 175 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 PRB1P04280 392 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 CACNG7P62955 275 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 GAGE1Q13065 139 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 GOLT1BQ9Y3E0 138 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 ZNF462Q96JM2 2506 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 TMEM8BA6NDV4 472 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 LINC01546A6NGU7 62 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 SPRY2O43597 315 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 KIR3DS1Q14943 382 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 MXRA5Q9NR99 2828 aa11.7□□□□□ -0.54
UPF3B-202ENST00000345865 TRAV26-2A0A0B4J265 109 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 SNAI2O43623 268 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 RPL11P62913 178 aaKnown RBP11.69□□□□□ -0.54
UPF3B-202ENST00000345865 LGALS9BQ3B8N2 356 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 ANKRD39Q53RE8 183 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 LGALS9CQ6DKI2 356 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 IFI27L1Q96BM0 104 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 H3BVH4 76 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 IGHV4-59P01825 116 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 C10orf99Q6UWK7 81 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 MAPK1IP1LQ8NDC0 245 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 RHPN1-AS1Q9BWJ2 59 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 LRRK2Q5S007 2527 aa11.69□□□□□ -0.54
UPF3B-202ENST00000345865 IGLV2-18A0A075B6J9 118 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 A0A096LNT2 108 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 ZNF124Q15973 351 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 DEFB112Q30KQ8 113 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms