RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 METTL26Q96S19 204 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 CEACAM4O75871 244 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 WIPF2Q8TF74 440 aaPredicted RBP9.38□□□□□ -0.91
USP1-201ENST00000339950 JMJD8Q96S16 334 aa9.38□□□□□ -0.91
USP1-201ENST00000339950 SMIM17P0DL12 118 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 ZFP36P26651 326 aaKnown RBP9.37□□□□□ -0.91
USP1-201ENST00000339950 RNASE4P34096 147 aaKnown RBP9.37□□□□□ -0.91
USP1-201ENST00000339950 CKS1BP61024 79 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 SEC11AP67812 179 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 TMEM30BQ3MIR4 351 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 ADAMTSL5Q6ZMM2 481 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 OR11H12B2RN74 326 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 GAS8-AS1O95177 125 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 C1orf122Q6ZSJ8 110 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 PCP2Q8IVA1 136 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 Q8N976 141 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 OR11H1Q8NG94 326 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 OR11H2Q8NH07 326 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 CYSLTR1Q9Y271 337 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 I3L2K1 104 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 IGLV1-47P01700 117 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 THAP8Q8NA92 274 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 CSTL1Q9H114 145 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 SIGLEC8Q9NYZ4 499 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 PHLDA3Q9Y5J5 127 aa9.37□□□□□ -0.91
USP1-201ENST00000339950 FLNCQ14315 2725 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 RAI1Q7Z5J4 1906 aaPredicted RBP9.36□□□□□ -0.91
USP1-201ENST00000339950 BMI1P35226 326 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 ATP5J2P56134 94 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 ZC2HC1BQ5TFG8 222 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 MRPL51Q4U2R6 128 aaKnown RBP9.36□□□□□ -0.91
USP1-201ENST00000339950 ANKRD39Q53RE8 183 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 FAM231DQ6ZW35 169 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 ATP5L2Q7Z4Y8 100 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 IGHV3-64A0A075B6Q5 118 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 EFNA4P52798 201 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 ANXA2RQ3ZCQ2 193 aa9.36□□□□□ -0.91
USP1-201ENST00000339950 MRPL52Q86TS9 123 aaKnown RBP9.36□□□□□ -0.91
USP1-201ENST00000339950 FABP5P3A8MUU1 101 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 LTAP01374 205 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 HBDP02042 147 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 AZU1P20160 251 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 TMEM95Q3KNT9 176 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 C2orf70A6NJV1 201 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 H3BMG7 143 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 GNLYP22749 145 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 ZNF80P51504 273 aaPredicted RBP9.35□□□□□ -0.91
USP1-201ENST00000339950 PVRIGQ6DKI7 326 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 SIGLEC15Q6ZMC9 328 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 C14orf178Q8N769 122 aaPredicted RBP9.35□□□□□ -0.91
USP1-201ENST00000339950 ATP5G2Q06055 141 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 FOXE3Q13461 319 aa9.35□□□□□ -0.91
USP1-201ENST00000339950 CHCHD1Q96BP2 118 aaKnown RBP9.35□□□□□ -0.91
USP1-201ENST00000339950 IGHV3OR16-12A0A075B7B8 117 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 TAX1BP3O14907 124 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 CTRLP40313 264 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 HSD52Q0P140 79 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 SH2D6Q7Z4S9 175 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 TMEM158Q8WZ71 300 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 C7orf69Q9H7B7 122 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 TEX48A0A1B0GUV7 120 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 PSMB11A5LHX3 300 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 K7ENP7 123 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 KLRB1Q12918 225 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 C3orf36Q3SXR2 165 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 ZNF256Q9Y2P7 627 aaPredicted RBP9.34□□□□□ -0.91
USP1-201ENST00000339950 NEU4Q8WWR8 484 aaPredicted RBP9.34□□□□□ -0.91
USP1-201ENST00000339950 PRR25Q96S07 402 aa9.34□□□□□ -0.91
USP1-201ENST00000339950 IGHV3-73A0A0B4J1V6 119 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 CRIP1P50238 77 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 GAGE13Q4V321 117 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 RASL11AQ6T310 242 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 PRTN3P24158 256 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 TMEM170BQ5T4T1 132 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 DCHS2Q6V1P9 2916 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 ANKRD17O75179 2603 aaKnown RBP9.33□□□□□ -0.92
USP1-201ENST00000339950 TTC32Q5I0X7 151 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 ZNF562Q6V9R5 426 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 DEFB125Q8N687 156 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 MS4A6AQ9H2W1 248 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 CRYBG3Q68DQ2 2970 aa9.33□□□□□ -0.92
USP1-201ENST00000339950 H3BUX3 64 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 AGRNO00468 2067 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 IGF1P05019 195 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 LINC00311Q8N616 119 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 ITPR1Q14643 2758 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 A0A087WWL8 130 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 H3BRN7 92 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 OR5A1Q8NGJ0 315 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 FANCD2OSQ96PS1 177 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 NCOR1P1Q9H4R4 102 aa9.32□□□□□ -0.92
USP1-201ENST00000339950 ZNF688P0C7X2 276 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 URB1-AS1Q96HZ7 61 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 CELSR1Q9NYQ6 3014 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 CTSGP08311 255 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 RPL13AP40429 203 aaKnown RBP9.31□□□□□ -0.92
USP1-201ENST00000339950 FAM104BQ5XKR9 115 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 OR4X2Q8NGF9 303 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 OR10J6PQ8NGY7 276 aa9.31□□□□□ -0.92
USP1-201ENST00000339950 TRAV8-2A0A0B4J237 113 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms