RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 Q8TAT8 98 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 ZNF48Q96MX3 618 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 SORL1Q92673 2214 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 IGHV3-11P01762 117 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 J3QLI3 93 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 ZNF134P52741 427 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 PTPN13Q12923 2485 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 CEACAM8P31997 349 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 IFITM1P13164 125 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 ZC2HC1AQ96GY0 325 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 JPT2Q9H910 190 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 TP53TG1Q9Y2A0 90 aa8.22□□□□□ -1.09
CCDC88A-202ENST00000336838 LY6G6EA0A0G2JKS1 128 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 VGLL1Q99990 258 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 U3KQA8 63 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 RHPN1-AS1Q9BWJ2 59 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 GAGE12HA6NDE8 117 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 TGFAP01135 160 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 C8orf86Q6ZUL3 223 aa8.21□□□□□ -1.09
CCDC88A-202ENST00000336838 K7EN84 100 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 SAA4P35542 130 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 SS18Q15532 418 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 LINC00479Q96M42 142 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 CHCHD5Q9BSY4 110 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 LINC00158P58513 81 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 HERVK_113P63121 156 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 DMRTC2Q8IXT2 367 aaPredicted RBP8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 STPG4Q8N801 248 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 ZNF747Q9BV97 191 aa8.21□□□□□ -1.1
CCDC88A-202ENST00000336838 IGLC7A0M8Q6 106 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 AGRNO00468 2067 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 RPL32P62910 135 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 TRAV12-3A0A0B4J271 114 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 IGKV3OR2-268A0A0C4DH90 116 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 C9JAW5 83 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 IGHV3OR16-8A0A075B7F1 116 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 LINC01356Q8N9X3 169 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 NPSP0C0P6 89 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 SPXQ9BT56 116 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 ATP6V0E2Q8NHE4 81 aa8.2□□□□□ -1.1
CCDC88A-202ENST00000336838 PPIFP30405 207 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 Q6ZR03 302 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 PRIMA1Q86XR5 153 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 WIPF3A6NGB9 483 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 TFF1P04155 84 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 CR1LQ2VPA4 569 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 IGF2BP2-AS1Q96M15 143 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 TRAV12-1A0A0B4J245 112 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 PAX4O43316 350 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 TECTAO75443 2155 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 SDHAF1A6NFY7 115 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 SOCS3O14543 225 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 PRSS57Q6UWY2 283 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 NPBQ8NG41 125 aa8.19□□□□□ -1.1
CCDC88A-202ENST00000336838 LOXP28300 417 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 FOXE3Q13461 319 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 SPATA12Q7Z6I5 190 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 NDUFS7O75251 213 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 MED14OSP0DP75 135 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 SCRT2Q9NQ03 307 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 CD33P20138 364 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 C8orf49Q96NF6 230 aa8.18□□□□□ -1.1
CCDC88A-202ENST00000336838 C11orf1Q9H5F2 150 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 DSCAML1Q8TD84 2053 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 IGHV1OR15-1A0A075B7D0 117 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 E7EQL1 145 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 FCN3O75636 299 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 GP9P14770 177 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 TMEM213A2RRL7 107 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 J3QQQ9 107 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 CTRLP40313 264 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 TRGV1A0A0A0MS02 117 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 H3BUX3 64 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 NPYP01303 97 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 HERV-K104P63124 156 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 PIP4P2Q8N4L2 257 aa8.17□□□□□ -1.1
CCDC88A-202ENST00000336838 TRBV25-1A0A075B6N4 114 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 A0A1B0GUS0 222 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 VWC2LB2RUY7 222 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 MRPL35Q9NZE8 188 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 RNF114Q9Y508 228 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 IGHV3OR16-10A0A075B7F0 116 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 CD24P25063 80 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 MYO18BQ8IUG5 2567 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 SMKR1H3BMG3 65 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 C6orf226Q5I0X4 101 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 H3BMG7 143 aa8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 TET2Q6N021 2002 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-202ENST00000336838 ATP6V0E1O15342 81 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 LYPD2Q6UXB3 125 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 FOXI2Q6ZQN5 318 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 ZNF491Q8N8L2 437 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 UBL5Q9BZL1 73 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 LINC00574Q9H8X3 128 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 IGHV1-69P01742 117 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 CACNA1AO00555 2505 aa8.15□□□□□ -1.1
CCDC88A-202ENST00000336838 PKIGQ9Y2B9 76 aa8.15□□□□□ -1.11
CCDC88A-202ENST00000336838 PRRC2AP48634 2157 aaKnown RBP8.15□□□□□ -1.11
CCDC88A-202ENST00000336838 OTOGLQ3ZCN5 2332 aa8.15□□□□□ -1.11
CCDC88A-202ENST00000336838 LAMTOR3Q9UHA4 124 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms