RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 OTORQ9NRC9 128 aa13.41□□□□□ -0.26
HMGA1-201ENST00000311487 UBE2CO00762 179 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 PHOX2AO14813 284 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 ZNF253O75346 499 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 IGLV2-8P01709 118 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 OR5I1Q13606 314 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 STHQ8IWL8 128 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 CMTM2Q8TAZ6 248 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 VGLL1Q99990 258 aa13.4□□□□□ -0.26
HMGA1-201ENST00000311487 TRAV8-1A0A0A6YYK1 113 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 CNN1P51911 297 aaKnown RBP13.39□□□□□ -0.27
HMGA1-201ENST00000311487 FAM3BP58499 235 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-201ENST00000311487 TAS2R60P59551 318 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 EBLN2Q6P2I7 272 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 LINC00479Q96M42 142 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 A0A0J9YX75 114 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 J3KRW8 73 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BKO60814 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BJP06899 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BOP23527 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BBP33778 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BDP58876 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BCP62807 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST2H2BEQ16778 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-201ENST00000311487 SAMD13Q5VXD3 122 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 GOLT1AQ6ZVE7 132 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 OR8A1Q8NGG7 326 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BHQ93079 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BNQ99877 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 HIST1H2BMQ99879 126 aa13.39□□□□□ -0.27
HMGA1-201ENST00000311487 H3BMM0 161 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 GCGP01275 180 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 TYMSP04818 313 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 FRMD6-AS1P0C7T7 363 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 FABP9Q0Z7S8 132 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 FOXI2Q6ZQN5 318 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 LYPD1Q8N2G4 141 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 FRZBQ92765 325 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 EPDR1Q9UM22 224 aa13.38□□□□□ -0.27
HMGA1-201ENST00000311487 TRAV34A0A0B4J273 112 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 DIRC3C9JPN6 131 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 CSN1S1P47710 185 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 Q8TAT8 98 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 TRGC1P0CF51 173 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 HLA-DRB4P13762 266 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 CMC4P56277 68 aaPredicted RBP13.37□□□□□ -0.27
HMGA1-201ENST00000311487 CLEC5AQ9NY25 188 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 IL36BQ9NZH7 164 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 V9GYV3 84 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 HLA-DRB4X5D2U9 266 aa13.37□□□□□ -0.27
HMGA1-201ENST00000311487 ERVFC1-1P60608 527 aa13.36□□□□□ -0.27
HMGA1-201ENST00000311487 KIR3DS1Q14943 382 aa13.36□□□□□ -0.27
HMGA1-201ENST00000311487 OR10J6PQ8NGY7 276 aa13.36□□□□□ -0.27
HMGA1-201ENST00000311487 FAM110AQ9BQ89 295 aa13.36□□□□□ -0.27
HMGA1-201ENST00000311487 M0R2Z0 102 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 RAB4BP61018 213 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 C5orf17Q8NAS9 161 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 AGPAT4-IT1Q9H0P7 198 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 OSTCQ9NRP0 149 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 TCRAP04437 139 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 NDUFA6P56556 154 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 TMEM183BQ1AE95 376 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 TRPT1Q86TN4 253 aaKnown RBP13.35□□□□□ -0.27
HMGA1-201ENST00000311487 NHLRC2Q8NBF2 726 aa13.35□□□□□ -0.27
HMGA1-201ENST00000311487 RNASE7Q9H1E1 156 aaKnown RBP13.35□□□□□ -0.27
HMGA1-201ENST00000311487 PRKDCP78527 4128 aaKnown RBP13.34□□□□□ -0.27
HMGA1-201ENST00000311487 TRAV12-2A0A075B6T6 113 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 CT45A10P0DMU9 189 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 MGST1P10620 155 aaKnown RBP13.34□□□□□ -0.27
HMGA1-201ENST00000311487 SPINK13Q1W4C9 94 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 BTF3L4Q96K17 158 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 ATG101Q9BSB4 218 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 KLF12Q9Y4X4 402 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 FBN3Q75N90 2809 aa13.34□□□□□ -0.27
HMGA1-201ENST00000311487 LOC102724200A0A096LPH7 203 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-201ENST00000311487 BAGE2Q86Y30 109 aa13.33□□□□□ -0.28
HMGA1-201ENST00000311487 XCL2Q9UBD3 114 aa13.33□□□□□ -0.28
HMGA1-201ENST00000311487 HOXA5P20719 270 aa13.33□□□□□ -0.28
HMGA1-201ENST00000311487 MRPL53Q96EL3 112 aaKnown RBP13.33□□□□□ -0.28
HMGA1-201ENST00000311487 TRAV9-1A0A075B6T8 112 aa13.32□□□□□ -0.28
HMGA1-201ENST00000311487 UBE2G1P62253 170 aa13.32□□□□□ -0.28
HMGA1-201ENST00000311487 ANKRD39Q53RE8 183 aa13.32□□□□□ -0.28
HMGA1-201ENST00000311487 SBSPONQ8IVN8 264 aa13.32□□□□□ -0.28
HMGA1-201ENST00000311487 CA1P00915 261 aaPredicted RBP13.31□□□□□ -0.28
HMGA1-201ENST00000311487 IBA57Q5T440 356 aaKnown RBP13.31□□□□□ -0.28
HMGA1-201ENST00000311487 AMTNQ6UX39 209 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 NPIPB6E9PJ23 425 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 GIG44P09565 113 aaPredicted RBP13.31□□□□□ -0.28
HMGA1-201ENST00000311487 TMEM78Q5T7P6 136 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 Q6ZQT7 251 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 PRNTQ86SH4 94 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 RETNQ9HD89 108 aa13.31□□□□□ -0.28
HMGA1-201ENST00000311487 LINC00322Q6ZN03 302 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-201ENST00000311487 FMC1Q96HJ9 113 aa13.3□□□□□ -0.28
HMGA1-201ENST00000311487 CSTL1Q9H114 145 aa13.3□□□□□ -0.28
HMGA1-201ENST00000311487 DUSP14O95147 198 aaKnown RBP13.29□□□□□ -0.28
HMGA1-201ENST00000311487 IGLV2-11P01706 119 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 DEFB135Q30KP9 77 aa13.29□□□□□ -0.28
HMGA1-201ENST00000311487 C9orf47Q6ZRZ4 202 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms