RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 K7EM74 188 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 CRYGBP07316 175 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 CGB3P0DN86 165 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 CGB7P0DN87 165 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 EXOC3-AS1Q8N2X6 119 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 FGFBP3Q8TAT2 258 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 NDUFA4L2Q9NRX3 87 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 TRGV11A0A075B6L2 103 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 HLA-DMBP28068 263 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 A6NED7 52 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 BUB3O43684 328 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 IL17RELQ6ZVW7 336 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 SHISA5Q8N114 240 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 Q8N7P7 452 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 MKI67P46013 3256 aaKnown RBP5.14□□□□□ -1.59
VPS35-201ENST00000299138 RHODO00212 210 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 C11orf44Q8N8P7 122 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 ZC2HC1AQ96GY0 325 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 RPL36AP83881 106 aaKnown RBP5.14□□□□□ -1.59
VPS35-201ENST00000299138 Q86TA4 180 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 RPL36ALQ969Q0 106 aaKnown RBP5.14□□□□□ -1.59
VPS35-201ENST00000299138 RNF125Q96EQ8 232 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 ORMDL1Q9P0S3 153 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 TP53TG3Q9ULZ0 132 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 TRAV3A0A0B4J244 114 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 K7EN84 100 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 IGHV1-8P0DP01 117 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 MYOD1P15172 320 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 C3orf22Q8N5N4 141 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 RP1P56715 2156 aa5.14□□□□□ -1.59
VPS35-201ENST00000299138 DOCK7Q96N67 2140 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 IGLV3-9A0A075B6K5 115 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 WISP1O95388 367 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 ZNF833PQ6ZTB9 187 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 NCOR1O75376 2440 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 TRGV1A0A0A0MS02 117 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 SH2D1AO60880 128 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 SAA2P0DJI9 122 aaPredicted RBP5.13□□□□□ -1.59
VPS35-201ENST00000299138 PLA2G2AP14555 144 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 FOXE3Q13461 319 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 ARHGEF17Q96PE2 2063 aaPredicted RBP5.13□□□□□ -1.59
VPS35-201ENST00000299138 TRIOBPQ9H2D6 2365 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 FAM236DA0A1B0GTK5 79 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 M0QXV9 152 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 TRBV12-3P01733 135 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 FAM236CP0DP71 79 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 RSPO4Q2I0M5 234 aaPredicted RBP5.13□□□□□ -1.59
VPS35-201ENST00000299138 TEX36Q5VZQ5 186 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 ZFP2Q6ZN57 461 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 CENPVL3A0A0U1RRI6 287 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 RFPL3SP0C7P2 107 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 FUSP35637 526 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS35-201ENST00000299138 TP53TG1Q9Y2A0 90 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 EYSQ5T1H1 3165 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 TRAV23DV6A0A075B6W5 121 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 MYCNOSP40205 109 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 CXCL5P42830 114 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 ZNF747Q9BV97 191 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 DKK4Q9UBT3 224 aa5.13□□□□□ -1.59
VPS35-201ENST00000299138 FGF23Q9GZV9 251 aaPredicted RBP5.12□□□□□ -1.59
VPS35-201ENST00000299138 SPANXB1Q9NS25 103 aaPredicted RBP5.12□□□□□ -1.59
VPS35-201ENST00000299138 ATG2BQ96BY7 2078 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 TMEM131Q92545 1883 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 C19orf71A6NCJ1 209 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 NPYP01303 97 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 IGLC1P0CG04 106 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 WFDC2Q14508 124 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 CABIN1Q9Y6J0 2220 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 ICE1Q9Y2F5 2266 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 TRAV13-2A0A0B4J235 113 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 ZNF561-AS1K7EIQ3 104 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 KAAG1Q9UBP8 84 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 SERTAD4-AS1Q5TG53 156 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 CPAMD8Q8IZJ3 1885 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 Q8TAT8 98 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 ZNF581Q9P0T4 197 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 TICRRQ7Z2Z1 1910 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 F5H768 121 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 LINC00310P59036 64 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 Q8N976 141 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 LENEPQ9Y5L5 61 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 C16orf97H3BN30 126 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 COX8CQ7Z4L0 72 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 TMEM105Q8N8V8 129 aa5.12□□□□□ -1.59
VPS35-201ENST00000299138 PI4KAP42356 2102 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 TDRD6O60522 2096 aaKnown RBP5.11□□□□□ -1.59
VPS35-201ENST00000299138 A4D1N5 150 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 NDUFB8O95169 186 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 IGLV2-8P01709 118 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 CECR9P0C854 216 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 FAM167A-AS1Q96KT0 104 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 LY6G6EA0A0G2JKS1 128 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 PMAIP1Q13794 54 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 MRPL53Q96EL3 112 aaKnown RBP5.11□□□□□ -1.59
VPS35-201ENST00000299138 U3KQA8 63 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 IGHV4-59P01825 116 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 IGFL4Q6B9Z1 124 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 TEN1Q86WV5 123 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 LINC00477Q96M19 166 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 NUPR1O60356 82 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms