RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 C11orf21Q9P2W6 132 aa18.26■□□□□ 0.51
TRIM54-201ENST00000296098 OR4C46A6NHA9 309 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 SOCS3O14543 225 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 SRSF1Q07955 248 aaKnown RBP eCLIP18.25■□□□□ 0.51
TRIM54-201ENST00000296098 TMEM95Q3KNT9 176 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 CKS2P33552 79 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 OR10AG1Q8NH19 301 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 MSRB1Q9NZV6 116 aa18.25■□□□□ 0.51
TRIM54-201ENST00000296098 LOC389332A0A1B0GUA5 103 aa18.24■□□□□ 0.51
TRIM54-201ENST00000296098 TGFAP01135 160 aa18.24■□□□□ 0.51
TRIM54-201ENST00000296098 PET117Q6UWS5 81 aa18.24■□□□□ 0.51
TRIM54-201ENST00000296098 LENEPQ9Y5L5 61 aa18.24■□□□□ 0.51
TRIM54-201ENST00000296098 FOXE3Q13461 319 aa18.23■□□□□ 0.51
TRIM54-201ENST00000296098 LINC00469Q8N7U9 141 aa18.23■□□□□ 0.51
TRIM54-201ENST00000296098 TIMM8BQ9Y5J9 83 aaPredicted RBP18.23■□□□□ 0.51
TRIM54-201ENST00000296098 UTP20O75691 2785 aaKnown RBP18.23■□□□□ 0.51
TRIM54-201ENST00000296098 IGHV7-4-1A0A0J9YVY3 117 aa18.23■□□□□ 0.51
TRIM54-201ENST00000296098 MAPK1IP1LQ8NDC0 245 aa18.23■□□□□ 0.51
TRIM54-201ENST00000296098 SMKR1H3BMG3 65 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 NUTF2P61970 127 aaKnown RBP18.22■□□□□ 0.51
TRIM54-201ENST00000296098 Q6ZN92 141 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 DAZ1Q9NQZ3 744 aaKnown RBP18.22■□□□□ 0.51
TRIM54-201ENST00000296098 OVOL1O14753 267 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 NCR2O95944 276 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 NPYP01303 97 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 IGLL1P15814 213 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 OR10J6PQ8NGY7 276 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 RNF185Q96GF1 192 aa18.22■□□□□ 0.51
TRIM54-201ENST00000296098 HNRNPA3P51991 378 aaKnown RBP18.21■□□□□ 0.51
TRIM54-201ENST00000296098 RPL11P62913 178 aaKnown RBP18.21■□□□□ 0.51
TRIM54-201ENST00000296098 FAM106AQ4KMX7 169 aa18.21■□□□□ 0.51
TRIM54-201ENST00000296098 RHPN1-AS1Q9BWJ2 59 aa18.21■□□□□ 0.51
TRIM54-201ENST00000296098 PEF1Q9UBV8 284 aaKnown RBP18.21■□□□□ 0.51
TRIM54-201ENST00000296098 CELSR2Q9HCU4 2923 aa18.21■□□□□ 0.51
TRIM54-201ENST00000296098 LOXL1Q08397 574 aaPredicted RBP18.2■□□□□ 0.5
TRIM54-201ENST00000296098 TM4SF20Q53R12 229 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 LINC00477Q96M19 166 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 ZNF747Q9BV97 191 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 ZNF462Q96JM2 2506 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 PPBPP02775 128 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 PSMB8P28062 276 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 PRR9Q5T870 116 aa18.2■□□□□ 0.5
TRIM54-201ENST00000296098 RNF223E7ERA6 249 aa18.19■□□□□ 0.5
TRIM54-201ENST00000296098 A0A096LNJ9 63 aa18.18■□□□□ 0.5
TRIM54-201ENST00000296098 H0Y8G0 127 aa18.18■□□□□ 0.5
TRIM54-201ENST00000296098 PRSS57Q6UWY2 283 aa18.18■□□□□ 0.5
TRIM54-201ENST00000296098 ANKRD17O75179 2603 aaKnown RBP18.18■□□□□ 0.5
TRIM54-201ENST00000296098 CRYBG3Q68DQ2 2970 aa18.18■□□□□ 0.5
TRIM54-201ENST00000296098 Q6ZQT7 251 aa18.17■□□□□ 0.5
TRIM54-201ENST00000296098 SMPXQ9UHP9 88 aa18.17■□□□□ 0.5
TRIM54-201ENST00000296098 ZFYVE26Q68DK2 2539 aa18.17■□□□□ 0.5
TRIM54-201ENST00000296098 K7EMT4 169 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 TCF21O43680 179 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 LINC01545Q5VT33 79 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 ST20Q9HBF5 79 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 LAMTOR2Q9Y2Q5 125 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 UBR5O95071 2799 aaPredicted RBP18.16■□□□□ 0.5
TRIM54-201ENST00000296098 TMEM89A2RUT3 159 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 BATFQ16520 125 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 ZFAND2AQ8N6M9 145 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 MAP1LC3AQ9H492 121 aa18.16■□□□□ 0.5
TRIM54-201ENST00000296098 IGKV3-7A0A075B6H7 116 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 FSHBP01225 129 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 RPLP1P05386 114 aaKnown RBP18.15■□□□□ 0.5
TRIM54-201ENST00000296098 IGHV4-31P0DP07 118 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 SNAI2O43623 268 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 TSPOP30536 169 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 MCRIP2Q9BUT9 160 aaKnown RBP18.15■□□□□ 0.5
TRIM54-201ENST00000296098 VPREB3Q9UKI3 123 aa18.15■□□□□ 0.5
TRIM54-201ENST00000296098 hDV102S1A0JD36 115 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 HSBP1L1C9JCN9 74 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 J3KRW8 73 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 HBDP02042 147 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 DEFB1P60022 68 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 KRTAP10-9P60411 292 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 BEX4Q9NWD9 120 aaPredicted RBP18.14■□□□□ 0.49
TRIM54-201ENST00000296098 FBN2P35556 2912 aa18.14■□□□□ 0.49
TRIM54-201ENST00000296098 CACNG7P62955 275 aa18.13■□□□□ 0.49
TRIM54-201ENST00000296098 C10orf99Q6UWK7 81 aa18.13■□□□□ 0.49
TRIM54-201ENST00000296098 SMIM15Q7Z3B0 74 aa18.13■□□□□ 0.49
TRIM54-201ENST00000296098 OR8A1Q8NGG7 326 aa18.13■□□□□ 0.49
TRIM54-201ENST00000296098 UFC1Q9Y3C8 167 aa18.13■□□□□ 0.49
TRIM54-201ENST00000296098 IGHV4-4A0A075B6R2 117 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 TRAV21A0A0B4J279 112 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 H3BVH4 76 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 EDN2P20800 178 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 FAM19A4Q96LR4 140 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 MRPS16Q9Y3D3 137 aaKnown RBP18.12■□□□□ 0.49
TRIM54-201ENST00000296098 MAP1AP78559 2803 aaPredicted RBP18.12■□□□□ 0.49
TRIM54-201ENST00000296098 FAM208BQ5VWN6 2430 aa18.12■□□□□ 0.49
TRIM54-201ENST00000296098 GAS8-AS1O95177 125 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 TNFRSF6BO95407 300 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 DEFB113Q30KQ7 82 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 SPANXN1Q5VSR9 72 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 CSPG4Q6UVK1 2322 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 CR1P17927 2039 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 F6UB75 175 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 EVI2AP22794 236 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 Q5PR19 223 aa18.11■□□□□ 0.49
TRIM54-201ENST00000296098 PMCHL2Q9BQD1 86 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 212.5 ms