RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 ZNF688P0C7X2 276 aa6.88□□□□□ -1.31
VAPB-201ENST00000265619 CECR9P0C854 216 aa6.88□□□□□ -1.31
VAPB-201ENST00000265619 SAA1P0DJI8 122 aaPredicted RBP6.88□□□□□ -1.31
VAPB-201ENST00000265619 TEN1Q86WV5 123 aa6.88□□□□□ -1.31
VAPB-201ENST00000265619 PIFOQ8TCI5 191 aa6.88□□□□□ -1.31
VAPB-201ENST00000265619 DLX4Q92988 240 aaPredicted RBP6.88□□□□□ -1.31
VAPB-201ENST00000265619 LRRK2Q5S007 2527 aa6.88□□□□□ -1.31
VAPB-201ENST00000265619 NDUFA3O95167 84 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 Q6ZT83 130 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 FBXL15Q9H469 300 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 RPUSD1Q9UJJ7 312 aaKnown RBP6.87□□□□□ -1.31
VAPB-201ENST00000265619 WIPF1O43516 503 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 ZNF493Q6ZR52 646 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 Q6ZS92 163 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 SEM1Q6ZVN7 128 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 RAB9BQ9NP90 201 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 DKK4Q9UBT3 224 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 FAM215AQ9Y5M1 114 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 HOXA3O43365 443 aaPredicted RBP6.87□□□□□ -1.31
VAPB-201ENST00000265619 FAM201AQ5SY85 155 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 CALYQ9NYX4 217 aa6.87□□□□□ -1.31
VAPB-201ENST00000265619 ASH1LQ9NR48 2969 aaKnown RBP6.86□□□□□ -1.31
VAPB-201ENST00000265619 IGKV1D-17A0A075B6S4 117 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 LOC107984640A0A0U1RRK4 108 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 IGHG3P01860 377 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 CKS2P33552 79 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 SRSF1Q07955 248 aaKnown RBP eCLIP6.86□□□□□ -1.31
VAPB-201ENST00000265619 POLQO75417 2590 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 ZNF474Q6S9Z5 364 aaPredicted RBP6.86□□□□□ -1.31
VAPB-201ENST00000265619 ZNF575Q86XF7 245 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 OR1L4Q8NGR5 311 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 KLF14Q8TD94 323 aaPredicted RBP6.86□□□□□ -1.31
VAPB-201ENST00000265619 CFHR4Q92496 578 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 PLEKHB2Q96CS7 222 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 ITPR1Q14643 2758 aa6.86□□□□□ -1.31
VAPB-201ENST00000265619 GAGE2BQ13066 116 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 GAGE2EQ4V326 116 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 MEIG1Q5JSS6 88 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 C22orf34Q6ZV56 151 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 OR1L8Q8NGR8 309 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 GAGE2DQ9UEU5 116 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 M0R3E3 92 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 DPM2O94777 84 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 IL4P05112 153 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 PRDX2P32119 198 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 C17orf58Q2M2W7 97 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 RASL10AQ92737 203 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 SRSF9Q13242 221 aaKnown RBP eCLIP6.85□□□□□ -1.31
VAPB-201ENST00000265619 FLNCQ14315 2725 aa6.85□□□□□ -1.31
VAPB-201ENST00000265619 EFNA4P52798 201 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 HCP5Q6MZN7 132 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 IGFL2Q6UWQ7 119 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 TMEM75Q8N9X5 138 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 RPEQ96AT9 228 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 RNF185Q96GF1 192 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 TPSG1Q9NRR2 321 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 NDUFA4L2Q9NRX3 87 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 K7ENP7 123 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 LGALS1P09382 135 aaKnown RBP6.84□□□□□ -1.31
VAPB-201ENST00000265619 IFITM1P13164 125 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 UBE2D3P61077 147 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 UBE2D2P62837 147 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 ZNF462Q96JM2 2506 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 A0A0G2JNJ9 132 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 CENPVL3A0A0U1RRI6 287 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 HOXB4P17483 251 aaPredicted RBP6.84□□□□□ -1.31
VAPB-201ENST00000265619 TRPT1Q86TN4 253 aaKnown RBP6.84□□□□□ -1.31
VAPB-201ENST00000265619 Q8NA96 180 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 NRGNQ92686 78 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 CHCHD5Q9BSY4 110 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 Q9UFV3 132 aa6.84□□□□□ -1.31
VAPB-201ENST00000265619 PTPN13Q12923 2485 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 IGHV1-18A0A0C4DH31 117 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 CCL8P80075 99 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 BSNQ9UPA5 3926 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 CCL21O00585 134 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 TWIST1Q15672 202 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 OXLD1Q5BKU9 147 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 TTC32Q5I0X7 151 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 LINC01560Q8TB33 94 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 ODF3Q96PU9 254 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 CSDC2Q9Y534 153 aaKnown RBP6.83□□□□□ -1.32
VAPB-201ENST00000265619 TRAV8-2A0A0B4J237 113 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 MYMXA0A1B0GTQ4 84 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 PPP1R27Q86WC6 154 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 RNF152Q8N8N0 203 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 FAM57AQ8TBR7 257 aa6.83□□□□□ -1.32
VAPB-201ENST00000265619 UTP20O75691 2785 aaKnown RBP6.82□□□□□ -1.32
VAPB-201ENST00000265619 IQCF6A8MYZ5 107 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 PF4P02776 101 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 GRNP28799 593 aaKnown RBP6.82□□□□□ -1.32
VAPB-201ENST00000265619 KIR2DS2P43631 304 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 TAL2Q16559 108 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 POU2AF1Q16633 256 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 THAP8Q8NA92 274 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 CFAP46Q8IYW2 2715 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.82□□□□□ -1.322e-8■■■■■ 32.4
VAPB-201ENST00000265619 RAI1Q7Z5J4 1906 aaPredicted RBP6.82□□□□□ -1.32
VAPB-201ENST00000265619 A0A1W2PRX2 142 aa6.82□□□□□ -1.32
VAPB-201ENST00000265619 ELANEP08246 267 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms