RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 TMEM183BQ1AE95 376 aa12.49□□□□□ -0.41
SDCBP-201ENST00000260130 IBA57Q5T440 356 aaKnown RBP12.49□□□□□ -0.41
SDCBP-201ENST00000260130 ASCL2Q99929 193 aa12.49□□□□□ -0.41
SDCBP-201ENST00000260130 RNASE7Q9H1E1 156 aaKnown RBP12.49□□□□□ -0.41
SDCBP-201ENST00000260130 MS4A6AQ9H2W1 248 aa12.49□□□□□ -0.41
SDCBP-201ENST00000260130 RAB4AP20338 218 aa12.49□□□□□ -0.41
SDCBP-201ENST00000260130 IGF2BP2-AS1Q96M15 143 aa12.49□□□□□ -0.41
SDCBP-201ENST00000260130 HLA-DQA1P01909 254 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 TMEM136Q6ZRR5 245 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 WFDC3Q8IUB2 231 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 SBSPONQ8IVN8 264 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 GLMPQ8WWB7 406 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 DNAJC4Q9NNZ3 241 aa12.48□□□□□ -0.41
SDCBP-201ENST00000260130 SMIM27A0A1W2PRY6 76 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 NHLRC4P0CG21 123 aaPredicted RBP12.47□□□□□ -0.41
SDCBP-201ENST00000260130 MGST1P10620 155 aaKnown RBP12.47□□□□□ -0.41
SDCBP-201ENST00000260130 UBE2L3P68036 154 aaKnown RBP12.47□□□□□ -0.41
SDCBP-201ENST00000260130 NEU1Q99519 415 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 ZNF586Q9NXT0 402 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 TRAV2A0A0B4J234 112 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 IGLV2-8P01709 118 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 ORM2P19652 201 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 CMC4P56277 68 aaPredicted RBP12.47□□□□□ -0.41
SDCBP-201ENST00000260130 ODF3L2Q3SX64 289 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 ZNF705AQ6ZN79 300 aaPredicted RBP12.47□□□□□ -0.41
SDCBP-201ENST00000260130 OR1L4Q8NGR5 311 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 FAM110AQ9BQ89 295 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 MIEN1Q9BRT3 115 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 VAMP8Q9BV40 100 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 SLC25A2Q9BXI2 301 aa12.47□□□□□ -0.41
SDCBP-201ENST00000260130 COL7A1Q02388 2944 aa12.46□□□□□ -0.41
SDCBP-201ENST00000260130 STXBP6Q8NFX7 210 aa12.46□□□□□ -0.41
SDCBP-201ENST00000260130 FAM167A-AS1Q96KT0 104 aa12.46□□□□□ -0.41
SDCBP-201ENST00000260130 F2Z2F3 143 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 COX7A2P2O60397 106 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 SPINK4O60575 86 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 GPX1P07203 203 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 SIGLEC15Q6ZMC9 328 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 LINC00322Q6ZN03 302 aaPredicted RBP12.46□□□□□ -0.42
SDCBP-201ENST00000260130 OR1B1Q8NGR6 318 aa12.46□□□□□ -0.42
SDCBP-201ENST00000260130 PLP1P60201 277 aa12.45□□□□□ -0.42
SDCBP-201ENST00000260130 KCNS1Q96KK3 526 aa12.45□□□□□ -0.42
SDCBP-201ENST00000260130 RBMY1BA6NDE4 496 aaKnown RBP12.45□□□□□ -0.42
SDCBP-201ENST00000260130 RBMY1EA6NEQ0 496 aaKnown RBP12.45□□□□□ -0.42
SDCBP-201ENST00000260130 RBMY1DP0C7P1 496 aaKnown RBP12.45□□□□□ -0.42
SDCBP-201ENST00000260130 TCL1AP56279 114 aa12.45□□□□□ -0.42
SDCBP-201ENST00000260130 C10orf113Q5VZT2 155 aa12.45□□□□□ -0.42
SDCBP-201ENST00000260130 RASL11AQ6T310 242 aa12.45□□□□□ -0.42
SDCBP-201ENST00000260130 K7EQG2 157 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 ZNF253O75346 499 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 S100A7P31151 101 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 OR4B1Q8NGF8 309 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 DCANP1Q8TF63 244 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 PAXXQ9BUH6 204 aa12.44□□□□□ -0.42
SDCBP-201ENST00000260130 ZNF331Q9NQX6 463 aaPredicted RBP12.44□□□□□ -0.42
SDCBP-201ENST00000260130 HYPMO75409 117 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 MRPL54Q6P161 138 aaKnown RBP12.43□□□□□ -0.42
SDCBP-201ENST00000260130 FAM231DQ6ZW35 169 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 MAP6D1Q9H9H5 199 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 PAM16Q9Y3D7 125 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 TRAV5A0A0B4J249 113 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 AMTP48728 403 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 APRG1Q8IVJ8 170 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 ATG101Q9BSB4 218 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 NRN1Q9NPD7 142 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 HIGD1AQ9Y241 93 aa12.43□□□□□ -0.42
SDCBP-201ENST00000260130 APCSP02743 223 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 SRIP30626 198 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 KRTDAPP60985 99 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 KIAA1644Q3SXP7 199 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 MORN5Q5VZ52 161 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 DIRC3C9JPN6 131 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 PEX7O00628 323 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 TDRG1Q3Y452 100 aa12.42□□□□□ -0.42
SDCBP-201ENST00000260130 SLC25A39Q9BZJ4 359 aaPredicted RBP12.42□□□□□ -0.42
SDCBP-201ENST00000260130 HUWE1Q7Z6Z7 4374 aaKnown RBP12.41□□□□□ -0.42
SDCBP-201ENST00000260130 DEFB131AP59861 70 aa12.41□□□□□ -0.42
SDCBP-201ENST00000260130 ZNF124Q15973 351 aa12.41□□□□□ -0.42
SDCBP-201ENST00000260130 PATE2Q6UY27 113 aa12.41□□□□□ -0.42
SDCBP-201ENST00000260130 S100A7AQ86SG5 101 aa12.41□□□□□ -0.42
SDCBP-201ENST00000260130 TM2D3Q9BRN9 247 aa12.41□□□□□ -0.42
SDCBP-201ENST00000260130 LOC102724200A0A096LPH7 203 aaPredicted RBP12.4□□□□□ -0.42
SDCBP-201ENST00000260130 H3BRN7 92 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 ZNF324O75467 553 aaPredicted RBP12.4□□□□□ -0.42
SDCBP-201ENST00000260130 PYYP10082 97 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 SHANK2-AS3Q9BTD1 123 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 ZMAT4Q9H898 229 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 PMCHP20382 165 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 NHLRC2Q8NBF2 726 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 RCHY1Q96PM5 261 aa12.4□□□□□ -0.42
SDCBP-201ENST00000260130 ZNF688P0C7X2 276 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 LEMD1Q68G75 181 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 GPR82Q96P67 336 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 HIST1H1EP10412 219 aaKnown RBP12.39□□□□□ -0.43
SDCBP-201ENST00000260130 FXYD5Q96DB9 178 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 SMIM12Q96EX1 92 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 LINC00479Q96M42 142 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 U3KQK5 164 aa12.39□□□□□ -0.43
SDCBP-201ENST00000260130 CA1P00915 261 aaPredicted RBP12.38□□□□□ -0.43
SDCBP-201ENST00000260130 SNRPD3P62318 126 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms