RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TEX36Q5VZQ5 186 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 SCGB1D4Q6XE38 83 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 SS18L2Q9UHA2 77 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 AKAP13Q12802 2813 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 ADIPOQQ15848 244 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 GFRALQ6UXV0 394 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 NFE4Q86UQ8 179 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 DYNLRB1Q9NP97 96 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 ONECUT1Q9UBC0 465 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 LINC01549A6NIU2 74 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 TMEM178BH3BS89 294 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 BSPH1Q075Z2 132 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 IL17RELQ6ZVW7 336 aa11.18□□□□□ -0.62
SDC1-201ENST00000254351 TRAV17A0A0B4J275 112 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 SRSF9Q13242 221 aaKnown RBP eCLIP11.17□□□□□ -0.62
SDC1-201ENST00000254351 TM2D2Q9BX73 214 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 FAM215AQ9Y5M1 114 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 TIMM23O14925 209 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 FHL3Q13643 280 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 RRN3P1Q2M238 152 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 KLHL30-AS1Q8NEE0 82 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 ZNF502Q8TBZ5 544 aa11.17□□□□□ -0.62
SDC1-201ENST00000254351 SPTAN1Q13813 2472 aaKnown RBP11.16□□□□□ -0.62
SDC1-201ENST00000254351 LY6HO94772 140 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 DYNAPQ8N1N2 210 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 KIR2DL4Q99706 377 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 SPATA25Q9BR10 227 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 SMPXQ9UHP9 88 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 CFHR4Q92496 578 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 HIF1ANQ9NWT6 349 aa11.16□□□□□ -0.62
SDC1-201ENST00000254351 H7C2G1 150 aa11.15□□□□□ -0.62
SDC1-201ENST00000254351 HOXA3O43365 443 aaPredicted RBP11.15□□□□□ -0.62
SDC1-201ENST00000254351 XGP55808 180 aa11.15□□□□□ -0.62
SDC1-201ENST00000254351 RNF183Q96D59 192 aa11.15□□□□□ -0.62
SDC1-201ENST00000254351 HIGD1BQ9P298 99 aa11.15□□□□□ -0.62
SDC1-201ENST00000254351 OR11H12B2RN74 326 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 K7EM74 188 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 FOXI1Q12951 378 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 C8orf86Q6ZUL3 223 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 OR11H1Q8NG94 326 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 OR11H2Q8NH07 326 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 MRAP2Q96G30 205 aa11.15□□□□□ -0.63
SDC1-201ENST00000254351 RALYQ9UKM9 306 aaKnown RBP11.15□□□□□ -0.63
SDC1-201ENST00000254351 MRPS12O15235 138 aaKnown RBP11.14□□□□□ -0.63
SDC1-201ENST00000254351 COL6A6A6NMZ7 2263 aa11.14□□□□□ -0.63
SDC1-201ENST00000254351 BUB1B-PAK6H3BSN5 160 aa11.14□□□□□ -0.63
SDC1-201ENST00000254351 TMEM155Q4W5P6 130 aa11.14□□□□□ -0.63
SDC1-201ENST00000254351 ZNF575Q86XF7 245 aa11.14□□□□□ -0.63
SDC1-201ENST00000254351 GATD1Q8NB37 220 aa11.14□□□□□ -0.63
SDC1-201ENST00000254351 NXT2Q9NPJ8 142 aaKnown RBP11.14□□□□□ -0.63
SDC1-201ENST00000254351 SCGB1A1P11684 91 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 SMCPP49901 116 aaPredicted RBP11.13□□□□□ -0.63
SDC1-201ENST00000254351 KLRD1Q13241 179 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 SPANXN1Q5VSR9 72 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 PRO0461Q9UI25 63 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 PLEKHB2Q96CS7 222 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 M0R381 172 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 LAGE3Q14657 143 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 MORN3Q6PF18 240 aaPredicted RBP11.13□□□□□ -0.63
SDC1-201ENST00000254351 ZMAT4Q9H898 229 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 C11orf21Q9P2W6 132 aa11.13□□□□□ -0.63
SDC1-201ENST00000254351 FABP5P3A8MUU1 101 aa11.12□□□□□ -0.63
SDC1-201ENST00000254351 CRYGBP07316 175 aa11.12□□□□□ -0.63
SDC1-201ENST00000254351 IGLC6P0CF74 106 aa11.12□□□□□ -0.63
SDC1-201ENST00000254351 PRSS29PA6NIE9 313 aa11.12□□□□□ -0.63
SDC1-201ENST00000254351 CDIP1Q9H305 208 aa11.12□□□□□ -0.63
SDC1-201ENST00000254351 ZNF815PA8K554 130 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 ATP5LO75964 103 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 PRTN3P24158 256 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 DEFB1P60022 68 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 TMEM30BQ3MIR4 351 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 RAXQ9Y2V3 346 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 SMAD5-AS1Q9Y6J3 95 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 FAM90A27PA6NNH2 459 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 SCGB1C2P0DMR2 95 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 DLX6P56179 175 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 FOXC1Q12948 553 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 SCGB3A1Q96QR1 104 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 TLN1Q9Y490 2541 aaKnown RBP11.11□□□□□ -0.63
SDC1-201ENST00000254351 IGKV3D-20A0A0C4DH25 116 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 MBD3L4A6NDZ8 208 aaPredicted RBP11.11□□□□□ -0.63
SDC1-201ENST00000254351 MBD3L3A6NE82 208 aaPredicted RBP11.11□□□□□ -0.63
SDC1-201ENST00000254351 MBD3L5A6NJ08 208 aaPredicted RBP11.11□□□□□ -0.63
SDC1-201ENST00000254351 LYPD1Q8N2G4 141 aa11.11□□□□□ -0.63
SDC1-201ENST00000254351 MBD3L2Q8NHZ7 208 aaPredicted RBP11.11□□□□□ -0.63
SDC1-201ENST00000254351 SLC25A16P16260 332 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 PVRIGQ6DKI7 326 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 Q8N8P6 123 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 MYMXA0A1B0GTQ4 84 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 IGHG4P01861 327 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 ARL3P36405 182 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 TMEM78Q5T7P6 136 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 C1orf122Q6ZSJ8 110 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 SVIPQ8NHG7 77 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 CEP295Q9C0D2 2601 aa11.1□□□□□ -0.63
SDC1-201ENST00000254351 IGKV3-7A0A075B6H7 116 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 TRBV20-1A0A075B6N2 111 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 A0A087WX48 190 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 B5MCH6 92 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 LINC00311Q8N616 119 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms