RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FHL5Q5TD97 284 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 KIF1AQ12756 1690 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 A8MUN3 132 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 OVOL3O00110 214 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF721Q8TF20 911 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF625Q96I27 306 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 KDM6BO15054 1643 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 PSENENQ9NZ42 101 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 VEGFBP49765 207 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 ATP5EP56381 51 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF678Q5SXM1 525 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 A0A0B4J2C4 111 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 PRR32B1ATL7 298 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 FAM229AH3BQW9 127 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF876PQ49A33 203 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 Q8N1Y9 231 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 SLC25A45Q8N413 288 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 RETNLBQ9BQ08 111 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 CRYBG1Q9Y4K1 1723 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 IGHV1-58A0A0C4DH39 117 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 EGR2P11161 476 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 RPL18Q07020 188 aaKnown RBP2.83□□□□□ -1.96
SCN1A-221ENST00000641996 WFDC9Q8NEX5 89 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 OR52N5Q8NH56 324 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 C4orf45Q96LM5 186 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 HIGD1BQ9P298 99 aa2.83□□□□□ -1.96
SCN1A-221ENST00000641996 LHFPL1Q86WI0 220 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 FGF12P61328 243 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 KIAA0040Q15053 153 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 LGALS9BQ3B8N2 356 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 CD28P10747 220 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 MRPS21P82921 87 aaKnown RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 ZIC4Q8N9L1 334 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 SRSF12Q8WXF0 261 aaKnown RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 C8orf49Q96NF6 230 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 PTPRMP28827 1452 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 CTXND1A0A1B0GTU2 59 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 MSRB3Q8IXL7 192 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 MGAMO43451 1857 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 F8WEM9 126 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 RPS21P63220 83 aaKnown RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 SCRG1O75711 98 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 OR10AC1Q8NH08 325 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 PLA2G2FQ9BZM2 168 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 DEPDC5O75140 1603 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 MYO3AQ8NEV4 1616 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 BRWD3Q6RI45 1802 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 IGHV1-69DA0A0B4J2H0 117 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 IGFBP6P24592 240 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 FAM223AQ8IWN6 122 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF837Q96EG3 531 aaPredicted RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 SCGB3A1Q96QR1 104 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 DPH3P1Q9H4G8 78 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 TRPM1Q7Z4N2 1603 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 PARP4Q9UKK3 1724 aaKnown RBP2.82□□□□□ -1.96
SCN1A-221ENST00000641996 TRAV1-2A0A0B4J238 106 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 MYCNOSP40205 109 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 C7orf65Q6ZTY9 151 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 DLC1Q96QB1 1528 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 KLK15Q9H2R5 256 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 CAMTA1Q9Y6Y1 1673 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 A0A1B0GTH9 108 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 STATHP02808 62 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 RIGQ13278 110 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 CCL13Q99616 98 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 ERCC8Q13216 396 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 Q6ZS52 159 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 TOMM6Q96B49 74 aa2.82□□□□□ -1.96
SCN1A-221ENST00000641996 IGFL2Q6UWQ7 119 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 Q9H8V8 135 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 IGKV1D-13A0A0B4J2D9 117 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 NHLRC4P0CG21 123 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-221ENST00000641996 IGKV1-13P0DP09 117 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 PSMB8P28062 276 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 TEPPQ6URK8 271 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 PLA2G2DQ9UNK4 145 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 TRBV7-6A0A0J9YX20 115 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 ARL14EPLP0DKL9 152 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 MPV17P39210 176 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 OVOL2Q9BRP0 275 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 ZFYVE16Q7Z3T8 1539 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 IZUMO1RA6ND01 250 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 VWC2LB2RUY7 222 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 NDUFS7O75251 213 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 FAM104BQ5XKR9 115 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 Q96M66 194 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 MPC1Q9Y5U8 109 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 P0DMU3 169 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 FAM231AP0DMU4 169 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 FAM231CP0DMU5 169 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 PIK3CD-AS1Q5SR53 167 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 PRR15LQ9BU68 103 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 MEGF6O75095 1541 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 FOXL2NBQ6ZUU3 175 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 A0A1B0GTL3 188 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 Q8N976 141 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 ZAR1LA6NP61 321 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 INAFM1C9JVW0 142 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 FXYD7P58549 80 aa2.81□□□□□ -1.96
SCN1A-221ENST00000641996 PRR15Q8IV56 129 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms