RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 C10orf113Q5VZT2 155 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 FRZBQ92765 325 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 ODF3Q96PU9 254 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 MGST2Q99735 147 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 FUT9Q9Y231 359 aa13.26□□□□□ -0.29
CLN3-262ENST00000637699 CAV2P51636 162 aa13.25□□□□□ -0.29
CLN3-262ENST00000637699 RAB32Q13637 225 aa13.25□□□□□ -0.29
CLN3-262ENST00000637699 CDPF1Q6NVV7 123 aa13.25□□□□□ -0.29
CLN3-262ENST00000637699 C11orf72Q8NBR9 251 aa13.25□□□□□ -0.29
CLN3-262ENST00000637699 PAX4O43316 350 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 IFNA5P01569 189 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 DNAH10OSP0CZ25 163 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 KRTAP10-1P60331 282 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 S100A10P60903 97 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 ENKURQ8TC29 256 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 C18orf15Q96N68 181 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 ICOSQ9Y6W8 199 aa13.24□□□□□ -0.29
CLN3-262ENST00000637699 TRAV5A0A0B4J249 113 aa13.23□□□□□ -0.29
CLN3-262ENST00000637699 C7orf71A4D174 169 aa13.23□□□□□ -0.29
CLN3-262ENST00000637699 SLC25A5P05141 298 aaKnown RBP13.23□□□□□ -0.29
CLN3-262ENST00000637699 NRARPQ7Z6K4 114 aa13.23□□□□□ -0.29
CLN3-262ENST00000637699 ZNF680Q8NEM1 530 aa13.23□□□□□ -0.29
CLN3-262ENST00000637699 LYRM2Q9NU23 88 aaPredicted RBP13.23□□□□□ -0.29
CLN3-262ENST00000637699 KLF12Q9Y4X4 402 aa13.23□□□□□ -0.29
CLN3-262ENST00000637699 IGSF23A1L1A6 192 aa13.22□□□□□ -0.29
CLN3-262ENST00000637699 ZNF324O75467 553 aaPredicted RBP13.22□□□□□ -0.29
CLN3-262ENST00000637699 SIX6O95475 246 aa13.22□□□□□ -0.29
CLN3-262ENST00000637699 IGHV3-53P01767 116 aa13.22□□□□□ -0.29
CLN3-262ENST00000637699 SMR3BP02814 79 aaPredicted RBP13.22□□□□□ -0.29
CLN3-262ENST00000637699 PVALBP20472 110 aaPredicted RBP13.22□□□□□ -0.29
CLN3-262ENST00000637699 ERCC8Q13216 396 aa13.22□□□□□ -0.29
CLN3-262ENST00000637699 DNAJC4Q9NNZ3 241 aa13.22□□□□□ -0.29
CLN3-262ENST00000637699 SRRM2Q9UQ35 2752 aaKnown RBP13.22□□□□□ -0.29
CLN3-262ENST00000637699 FLG2Q5D862 2391 aaPredicted RBP13.22□□□□□ -0.29
CLN3-262ENST00000637699 A0A087WTM6 91 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 RNASE4P34096 147 aaKnown RBP13.21□□□□□ -0.29
CLN3-262ENST00000637699 CAMLGP49069 296 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 CD300CQ08708 224 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 BTN1A1Q13410 526 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 GUK1Q16774 197 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 NFE4Q86UQ8 179 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 EIF4E3Q8N5X7 224 aaKnown RBP13.21□□□□□ -0.29
CLN3-262ENST00000637699 TMEM252Q8N6L7 170 aa13.21□□□□□ -0.29
CLN3-262ENST00000637699 GPN1Q9HCN4 374 aaPredicted RBP13.21□□□□□ -0.29
CLN3-262ENST00000637699 M0R3E3 92 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 SPINK4O60575 86 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 SULT1A1P50225 295 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 VWC2Q2TAL6 325 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 ANXA2RQ3ZCQ2 193 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 MIC13Q5XKP0 118 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 LYPD5Q6UWN5 251 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 Q6ZRG5 221 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 UQCC1Q9NVA1 299 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 MDFICQ9P1T7 246 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 WDR83OSQ9Y284 106 aa13.2□□□□□ -0.3
CLN3-262ENST00000637699 INMT-MINDY4F8WBC2 141 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 S100A11P31949 105 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 TCL1AP56279 114 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 ICAM4Q14773 271 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 ST6GAL2Q96JF0 529 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 LINC00467Q9BRT7 94 aa13.19□□□□□ -0.3
CLN3-262ENST00000637699 KLLNB2CW77 178 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 RAB31Q13636 194 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 C8orf49Q96NF6 230 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 MARVELD1Q9BSK0 173 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 AGPAT4-IT1Q9H0P7 198 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 MRPL16Q9NX20 251 aaKnown RBP13.18□□□□□ -0.3
CLN3-262ENST00000637699 PRO0255Q9UI72 69 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 HHLA3Q9XRX5 114 aa13.18□□□□□ -0.3
CLN3-262ENST00000637699 TRAV9-2A0A087WT02 112 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 UBE2L5PA0A1B0GUS4 154 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 PRAF2O60831 178 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 ZNF253O75346 499 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 MPDU1O75352 247 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 CRYBA4P53673 196 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 MRPL23Q16540 153 aaKnown RBP13.17□□□□□ -0.3
CLN3-262ENST00000637699 STX12Q86Y82 276 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 OR1L4Q8NGR5 311 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 MRPL53Q96EL3 112 aaKnown RBP13.17□□□□□ -0.3
CLN3-262ENST00000637699 TP53TG3Q9ULZ0 132 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 LY96Q9Y6Y9 160 aa13.17□□□□□ -0.3
CLN3-262ENST00000637699 TRBV19A0A075B6N1 114 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 GPX1P07203 203 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 GCSHP23434 173 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 HBG1P69891 147 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 HBG2P69892 147 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 NHLH2Q02577 135 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 BAXQ07812 192 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 FAM19A4Q96LR4 140 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 LINC00477Q96M19 166 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 NMES1Q9C002 83 aa13.16□□□□□ -0.3
CLN3-262ENST00000637699 H0YIZ8 118 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 RGS13O14921 159 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 RPL29P47914 159 aaKnown RBP13.15□□□□□ -0.3
CLN3-262ENST00000637699 H2BFSP57053 126 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 HAMPP81172 84 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 SLAQ13239 276 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 FHL2Q14192 279 aa13.15□□□□□ -0.3
CLN3-262ENST00000637699 IBA57Q5T440 356 aaKnown RBP13.15□□□□□ -0.3
CLN3-262ENST00000637699 Q6ZQT7 251 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms