RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 GOLT1BQ9Y3E0 138 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 MAP1LC3B2A6NCE7 125 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 M0R3E3 92 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 AMBPP02760 352 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 RANP62826 216 aaKnown RBP13.79□□□□□ -0.2
CLN3-260ENST00000637578 MAP1LC3BQ9GZQ8 125 aa13.79□□□□□ -0.2
CLN3-260ENST00000637578 KMT2AQ03164 3969 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 IGHV3OR16-12A0A075B7B8 117 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 TRAV10A0A0B4J240 114 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 CRXO43186 299 aaPredicted RBP13.78□□□□□ -0.2
CLN3-260ENST00000637578 FGF8P55075 233 aaPredicted RBP13.78□□□□□ -0.2
CLN3-260ENST00000637578 ICAM4Q14773 271 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 DPPA3Q6W0C5 159 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 IQCF2Q8IXL9 164 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 OR8A1Q8NGG7 326 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 AAMDCQ9H7C9 122 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 APLNQ9ULZ1 77 aa13.78□□□□□ -0.2
CLN3-260ENST00000637578 PRAC2D3DTV9 90 aa13.77□□□□□ -0.21
CLN3-260ENST00000637578 FAM74A1Q5RGS3 127 aa13.77□□□□□ -0.21
CLN3-260ENST00000637578 SUN5Q8TC36 379 aa13.77□□□□□ -0.21
CLN3-260ENST00000637578 Q9H3A6 140 aa13.77□□□□□ -0.21
CLN3-260ENST00000637578 TMPRSS5Q9H3S3 457 aa13.77□□□□□ -0.21
CLN3-260ENST00000637578 SULT1A2P50226 295 aa13.76□□□□□ -0.21
CLN3-260ENST00000637578 LYPD1Q8N2G4 141 aa13.76□□□□□ -0.21
CLN3-260ENST00000637578 MRPL53Q96EL3 112 aaKnown RBP13.76□□□□□ -0.21
CLN3-260ENST00000637578 TMEM167BQ9NRX6 74 aa13.76□□□□□ -0.21
CLN3-260ENST00000637578 EPPK1P58107 5090 aaKnown RBP13.76□□□□□ -0.21
CLN3-260ENST00000637578 IGLL5B9A064 214 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 M0R2Z0 102 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 SPART-AS1P0CW21 52 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 RAB5CP51148 216 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 HIST1H1AQ02539 215 aaPredicted RBP13.75□□□□□ -0.21
CLN3-260ENST00000637578 SPINK13Q1W4C9 94 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 SFT2D1Q8WV19 159 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 PRELID1Q9Y255 219 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 HBE1P02100 147 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 ALKAL2Q6UX46 152 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 MBD3L1Q8WWY6 194 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 DKK2Q9UBU2 259 aa13.75□□□□□ -0.21
CLN3-260ENST00000637578 H2AFB1P0C5Y9 115 aa13.74□□□□□ -0.21
CLN3-260ENST00000637578 ZNF767PQ75MW2 155 aa13.74□□□□□ -0.21
CLN3-260ENST00000637578 OTORQ9NRC9 128 aa13.74□□□□□ -0.21
CLN3-260ENST00000637578 VPS13DQ5THJ4 4388 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 DEFB131BA0A096LNP1 70 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 A0A1B0GV50 99 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 INSP01308 110 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 EMP1P54849 157 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 RRN3P1Q2M238 152 aa13.73□□□□□ -0.21
CLN3-260ENST00000637578 IGHV4-4A0A075B6R2 117 aa13.72□□□□□ -0.21
CLN3-260ENST00000637578 TEX48A0A1B0GUV7 120 aa13.72□□□□□ -0.21
CLN3-260ENST00000637578 LOC102723971A0A1B0GUV8 181 aa13.72□□□□□ -0.21
CLN3-260ENST00000637578 PGPA6NDG6 321 aa13.72□□□□□ -0.21
CLN3-260ENST00000637578 OR10J6PQ8NGY7 276 aa13.72□□□□□ -0.21
CLN3-260ENST00000637578 FAM222AQ5U5X8 452 aa13.71□□□□□ -0.21
CLN3-260ENST00000637578 YTHDF2Q9Y5A9 579 aaKnown RBP13.71□□□□□ -0.21
CLN3-260ENST00000637578 TRAV12-2A0A075B6T6 113 aa13.71□□□□□ -0.22
CLN3-260ENST00000637578 IGKV2-40A0A087WW87 121 aaPredicted RBP13.71□□□□□ -0.22
CLN3-260ENST00000637578 GGTLC3B5MD39 225 aa13.71□□□□□ -0.22
CLN3-260ENST00000637578 IGKV2D-40P01614 121 aaPredicted RBP13.71□□□□□ -0.22
CLN3-260ENST00000637578 CSN1S1P47710 185 aa13.71□□□□□ -0.22
CLN3-260ENST00000637578 UBE2G2P60604 165 aa13.71□□□□□ -0.22
CLN3-260ENST00000637578 TMEM208Q9BTX3 173 aa13.71□□□□□ -0.22
CLN3-260ENST00000637578 NPIPB6E9PJ23 425 aa13.7□□□□□ -0.22
CLN3-260ENST00000637578 TSPOP30536 169 aa13.7□□□□□ -0.22
CLN3-260ENST00000637578 CMTM2Q8TAZ6 248 aa13.7□□□□□ -0.22
CLN3-260ENST00000637578 NIPSNAP3BQ9BS92 247 aa13.7□□□□□ -0.22
CLN3-260ENST00000637578 TRAV1-1A0A0B4J248 108 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 A0A1W2PRE2 83 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 PRM2P04554 102 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 CDKN1BP46527 198 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 ERCC8Q13216 396 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 TMEM256Q8N2U0 113 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 RXFP4Q8TDU9 374 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 RPH3ALQ9UNE2 315 aa13.69□□□□□ -0.22
CLN3-260ENST00000637578 FAM74A7A6NL05 159 aa13.68□□□□□ -0.22
CLN3-260ENST00000637578 ZNF705GA8MUZ8 300 aaPredicted RBP13.68□□□□□ -0.22
CLN3-260ENST00000637578 DIRC3C9JPN6 131 aa13.68□□□□□ -0.22
CLN3-260ENST00000637578 SLC25A5P05141 298 aaKnown RBP13.68□□□□□ -0.22
CLN3-260ENST00000637578 SUMO1P63165 101 aaKnown RBP13.68□□□□□ -0.22
CLN3-260ENST00000637578 GNG5P63218 68 aa13.68□□□□□ -0.22
CLN3-260ENST00000637578 VGLL1Q99990 258 aa13.68□□□□□ -0.22
CLN3-260ENST00000637578 PPP1R14DQ9NXH3 145 aa13.68□□□□□ -0.22
CLN3-260ENST00000637578 PLAC8L1A1L4L8 177 aa13.67□□□□□ -0.22
CLN3-260ENST00000637578 CCL20P78556 96 aa13.67□□□□□ -0.22
CLN3-260ENST00000637578 C5orf17Q8NAS9 161 aa13.67□□□□□ -0.22
CLN3-260ENST00000637578 AGPAT4-IT1Q9H0P7 198 aa13.67□□□□□ -0.22
CLN3-260ENST00000637578 DNAH6Q9C0G6 4158 aa13.67□□□□□ -0.22
CLN3-260ENST00000637578 CT45A10P0DMU9 189 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 AZU1P20160 251 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 TAS2R60P59551 318 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 C9orf47Q6ZRZ4 202 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 GOLT1AQ6ZVE7 132 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 ARL6IP6Q8N6S5 226 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 FAM210BQ96KR6 192 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 ODF3Q96PU9 254 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 LINC01587Q99440 93 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 C20orf144Q9BQM9 153 aa13.66□□□□□ -0.22
CLN3-260ENST00000637578 BIRC6Q9NR09 4857 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 RBAKDNA6NC62 111 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 LYRM9A8MSI8 78 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms