RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CSN1S1P47710 185 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 TAS2R45P59539 299 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 UBE2L3P68036 154 aaKnown RBP8.24□□□□□ -1.09
CLN3-257ENST00000637110 TMEM78Q5T7P6 136 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 ZNF493Q6ZR52 646 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 FAM167A-AS1Q96KT0 104 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 LINC00477Q96M19 166 aa8.24□□□□□ -1.09
CLN3-257ENST00000637110 TIMM8BQ9Y5J9 83 aaPredicted RBP8.24□□□□□ -1.09
CLN3-257ENST00000637110 IGKV2-40A0A087WW87 121 aaPredicted RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 A0A1W2PPV4 95 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 SNURFLB1AK76 121 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 IGKV2D-40P01614 121 aaPredicted RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 SLC25A5P05141 298 aaKnown RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 RNASE4P34096 147 aaKnown RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 RANP62826 216 aaKnown RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 ACOT6Q3I5F7 207 aaPredicted RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 KHDC3LQ587J8 217 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 TMEM88Q6PEY1 159 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 POM121L12Q8N7R1 296 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 TMEM263Q8WUH6 116 aaKnown RBP8.23□□□□□ -1.09
CLN3-257ENST00000637110 FXYD5Q96DB9 178 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 ODF3Q96PU9 254 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 AGPAT4-IT1Q9H0P7 198 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 WFDC1Q9HC57 220 aa8.23□□□□□ -1.09
CLN3-257ENST00000637110 DNAH2Q9P225 4427 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 C7orf71A4D174 169 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 EIF3GO75821 320 aaKnown RBP eCLIP8.22□□□□□ -1.09
CLN3-257ENST00000637110 ATP5G1P05496 136 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 GPX1P07203 203 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 ATP5G3P48201 142 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 PHYHIPLQ96FC7 376 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 PYGO2Q9BRQ0 406 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 DNAH11Q96DT5 4516 aa8.22□□□□□ -1.09
CLN3-257ENST00000637110 PLAC8L1A1L4L8 177 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 CBY3A6NI87 242 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 M0R2N4 97 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 NUDT3O95989 172 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 BTN1A1Q13410 526 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 ZNF266Q14584 549 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 HSD17B11Q8NBQ5 300 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 CMTM2Q8TAZ6 248 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 RNASE8Q8TDE3 154 aaKnown RBP8.21□□□□□ -1.1
CLN3-257ENST00000637110 HYLS1Q96M11 299 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 VGLL1Q99990 258 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 ATG101Q9BSB4 218 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 Q9H3A6 140 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 RPH3ALQ9UNE2 315 aa8.21□□□□□ -1.1
CLN3-257ENST00000637110 GAGE12BA1L429 117 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 RGS13O14921 159 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 GAGE7O76087 117 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 GAGE12FP0CL80 117 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 GAGE12GP0CL81 117 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 GAGE12IP0CL82 117 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 M6PRP20645 277 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 RAB2AP61019 212 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 CD300CQ08708 224 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 OR5I1Q13606 314 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 FAM74A1Q5RGS3 127 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 C9orf47Q6ZRZ4 202 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 C15orf53Q8NAA6 179 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 INO80EQ8NBZ0 244 aaPredicted RBP8.2□□□□□ -1.1
CLN3-257ENST00000637110 OR10G4Q8NGN3 311 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 OR10G9Q8NGN4 311 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 OR10G7Q8NGN6 311 aa8.2□□□□□ -1.1
CLN3-257ENST00000637110 DYNC1H1Q14204 4646 aaKnown RBP8.2□□□□□ -1.1
CLN3-257ENST00000637110 IGLV2-18A0A075B6J9 118 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 FXYD6-FXYD2A0A087WZ82 144 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 HMGB3O15347 200 aaKnown RBP8.19□□□□□ -1.1
CLN3-257ENST00000637110 ZNF138P52744 262 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 RGS21Q2M5E4 152 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 LYPD1Q8N2G4 141 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 MAPKAPK5-AS1Q8N8E1 139 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 Q8TAT8 98 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 RXFP4Q8TDU9 374 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 ZNF503Q96F45 646 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 ZNF492Q9P255 531 aa8.19□□□□□ -1.1
CLN3-257ENST00000637110 HERC1Q15751 4861 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 PGPA6NDG6 321 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 KLLNB2CW77 178 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 RTL8CO15255 209 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 GIPP09681 153 aaPredicted RBP8.18□□□□□ -1.1
CLN3-257ENST00000637110 CRISP2P16562 243 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 Q5BKY6 102 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 PQLC2Q6ZP29 291 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 ZNF575Q86XF7 245 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 EIF4E3Q8N5X7 224 aaKnown RBP8.18□□□□□ -1.1
CLN3-257ENST00000637110 ZNF680Q8NEM1 530 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 ASB13Q8WXK3 278 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 FAM19A4Q96LR4 140 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 AQP10Q96PS8 301 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 ARPC5LQ9BPX5 153 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 GSN-AS1Q9NRJ2 163 aa8.18□□□□□ -1.1
CLN3-257ENST00000637110 HSPG2P98160 4391 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 TRGV2A0A075B6R0 118 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 TRGV1A0A0A0MS02 117 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 BORCS7-ASMTA0A0B4J1R7 106 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 RBAKDNA6NC62 111 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 DIRC3C9JPN6 131 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 CDK2AP2O75956 126 aa8.17□□□□□ -1.1
CLN3-257ENST00000637110 NMBP08949 121 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms