RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SRSF6Q13247 344 aaKnown RBP3.15□□□□□ -1.91
SCN1A-214ENST00000637038 BVES-AS1Q5T3Y7 98 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 LYPD2Q6UXB3 125 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 DEFB125Q8N687 156 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 FER1L6-AS1Q8NA97 138 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 GATD1Q8NB37 220 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 WWC2-AS2Q96NR7 200 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 NXT2Q9NPJ8 142 aaKnown RBP3.15□□□□□ -1.91
SCN1A-214ENST00000637038 C21orf62Q9NYP8 219 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 Q9UFV3 132 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 F8P00451 2351 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 TRBV7-9A0A0J9YWB2 115 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 hDV102S1A0JD36 115 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 TWIST1Q15672 202 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 EXOC3-AS1Q8N2X6 119 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 OR5A1Q8NGJ0 315 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 GTSF1Q8WW33 167 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 ARPC1AQ92747 370 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 SCRT2Q9NQ03 307 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 TPSG1Q9NRR2 321 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 RNF114Q9Y508 228 aa3.15□□□□□ -1.91
SCN1A-214ENST00000637038 NPIPB5A8MRT5 1133 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 I3L2K1 104 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 M0QXV9 152 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ATP5LO75964 103 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 TSPAN13O95857 204 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 CRYGBP07316 175 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 FAM104BQ5XKR9 115 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 SLC50A1Q9BRV3 221 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 C7orf71A4D174 169 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 OR2T8A6NH00 312 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 NCBP2LA6PVI3 153 aaKnown RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 SHISA9B4DS77 424 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 TEX22C9J3V5 150 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 E7EUB6 86 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 NDUFB8O95169 186 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ORM1P02763 201 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ARMS2P0C7Q2 107 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 FABP2P12104 132 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF493Q6ZR52 646 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 IGFBPL1Q8WX77 278 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 IFI27L1Q96BM0 104 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ZC2HC1AQ96GY0 325 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 ASCL2Q99929 193 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 GEMIN7Q9H840 131 aaKnown RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MRPL36Q9P0J6 103 aaKnown RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 CTSZQ9UBR2 303 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 PIEZO2Q9H5I5 2752 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 TRAV8-1A0A0A6YYK1 113 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MUC21A0A0G2JKD1 596 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MUC21A0A140T8X8 626 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 LOC389332A0A1B0GUA5 103 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 CGB1A6NKQ9 187 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 FABP5P3A8MUU1 101 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 H3BRM9 83 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 TNFRSF13BO14836 293 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 SH2D1AO60880 128 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 IGLV1-47P01700 117 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 SRSF2Q01130 221 aaKnown RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 DIAPH2-AS1Q14236 149 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MUC21Q5SSG8 566 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MINOS1Q5TGZ0 78 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 SIGLEC15Q6ZMC9 328 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 RNF152Q8N8N0 203 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 NEU4Q8WWR8 484 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MINOS1-NBL1R4GNA1 71 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 MTORP42345 2549 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 CSMD2Q7Z408 3487 aa3.14□□□□□ -1.91
SCN1A-214ENST00000637038 TMSB15BA0A087X1C1 80 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 D6R8Y8 96 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 E7EQL1 145 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 SNAI2O43623 268 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 PRSS1P07477 247 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 FAM106CPP0CH98 169 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 RHOGP84095 191 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 HIST2H2BCQ6DN03 193 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 LYZL1Q6UWQ5 148 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF841Q6ZN19 808 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 MYOZ3Q8TDC0 251 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 CUBNO60494 3623 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 ICE1Q9Y2F5 2266 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 IGKV1-17P01599 117 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 SMIM13P0DJ93 91 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 LCE2CQ5TA81 110 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 NPBQ8NG41 125 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 MDFIQ99750 246 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 WI2-2373I1.2A0A1W2PRP0 233 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 THBDP07204 575 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 NMUP48645 174 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 CACNG7P62955 275 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 MRGPRG-AS1Q2M3A8 158 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 TMEM78Q5T7P6 136 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 AMMECR1LQ6DCA0 310 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF562Q6V9R5 426 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 ZNF491Q8N8L2 437 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 JKAMPQ9P055 326 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 HILPDAQ9Y5L2 63 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 LRRK2Q5S007 2527 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 A0A1B0GV72 72 aa3.13□□□□□ -1.91
SCN1A-214ENST00000637038 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms