RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 C16orf92Q96LL3 132 aa16.84■□□□□ 0.29
PNKP-220ENST00000627232 ELANEP08246 267 aa16.83■□□□□ 0.28
PNKP-220ENST00000627232 ERCC8Q13216 396 aa16.83■□□□□ 0.28
PNKP-220ENST00000627232 C9orf47Q6ZRZ4 202 aa16.83■□□□□ 0.28
PNKP-220ENST00000627232 DAZ1Q9NQZ3 744 aaKnown RBP16.83■□□□□ 0.28
PNKP-220ENST00000627232 PTPN13Q12923 2485 aa16.83■□□□□ 0.28
PNKP-220ENST00000627232 F2Z2F3 143 aa16.82■□□□□ 0.28
PNKP-220ENST00000627232 C18orf32Q8TCD1 76 aa16.82■□□□□ 0.28
PNKP-220ENST00000627232 ALKBH7Q9BT30 221 aaPredicted RBP16.82■□□□□ 0.28
PNKP-220ENST00000627232 SSBP4Q9BWG4 385 aaPredicted RBP16.82■□□□□ 0.28
PNKP-220ENST00000627232 GSN-AS1Q9NRJ2 163 aa16.82■□□□□ 0.28
PNKP-220ENST00000627232 USP9YO00507 2555 aaPredicted RBP16.82■□□□□ 0.28
PNKP-220ENST00000627232 ZNF138P52744 262 aa16.81■□□□□ 0.28
PNKP-220ENST00000627232 MYOZ3Q8TDC0 251 aa16.81■□□□□ 0.28
PNKP-220ENST00000627232 BORCS7Q96B45 105 aa16.81■□□□□ 0.28
PNKP-220ENST00000627232 AGPAT4-IT1Q9H0P7 198 aa16.81■□□□□ 0.28
PNKP-220ENST00000627232 FABP5P3A8MUU1 101 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 SOCS3O14543 225 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 ZNF80P51504 273 aaPredicted RBP16.8■□□□□ 0.28
PNKP-220ENST00000627232 TMEM78Q5T7P6 136 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 Q8N2B8 174 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 WFDC11Q8NEX6 87 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 KCNS1Q96KK3 526 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 SMPXQ9UHP9 88 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 TMEM86BQ8N661 226 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 RNF152Q8N8N0 203 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 RHPN1-AS1Q9BWJ2 59 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 UFC1Q9Y3C8 167 aa16.8■□□□□ 0.28
PNKP-220ENST00000627232 ARMS2P0C7Q2 107 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 TM4SF20Q53R12 229 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 HIST2H2BCQ6DN03 193 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 CDPF1Q6NVV7 123 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 C10orf99Q6UWK7 81 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 IL17RELQ6ZVW7 336 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 NRN1Q9NPD7 142 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 LENEPQ9Y5L5 61 aa16.79■□□□□ 0.28
PNKP-220ENST00000627232 OVOL1O14753 267 aa16.78■□□□□ 0.28
PNKP-220ENST00000627232 SIGLECL1Q8N7X8 197 aa16.78■□□□□ 0.28
PNKP-220ENST00000627232 POLQO75417 2590 aa16.78■□□□□ 0.28
PNKP-220ENST00000627232 LOC102724200A0A096LPH7 203 aaPredicted RBP16.77■□□□□ 0.28
PNKP-220ENST00000627232 RPLP1P05386 114 aaKnown RBP16.77■□□□□ 0.28
PNKP-220ENST00000627232 LGALS1P09382 135 aaKnown RBP16.77■□□□□ 0.28
PNKP-220ENST00000627232 HIST1H1AQ02539 215 aaPredicted RBP16.77■□□□□ 0.28
PNKP-220ENST00000627232 C20orf173Q96LM9 149 aa16.77■□□□□ 0.28
PNKP-220ENST00000627232 RCHY1Q96PM5 261 aa16.77■□□□□ 0.28
PNKP-220ENST00000627232 SAMD10Q9BYL1 202 aa16.77■□□□□ 0.28
PNKP-220ENST00000627232 KMT2BQ9UMN6 2715 aaPredicted RBP16.77■□□□□ 0.28
PNKP-220ENST00000627232 CELSR2Q9HCU4 2923 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 CSMD1Q96PZ7 3565 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 GPX1P07203 203 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 LINC01559Q495D7 138 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 LYZL1Q6UWQ5 148 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 ZNF738Q8NE65 137 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 NAV2Q8IVL1 2488 aa16.76■□□□□ 0.27
PNKP-220ENST00000627232 IGLC6P0CF74 106 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 CTRLP40313 264 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 SAMD13Q5VXD3 122 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 ZNF493Q6ZR52 646 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 UBE2E2Q96LR5 201 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 LINC00477Q96M19 166 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 VPS13CQ709C8 3753 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 TMSB15BA0A087X1C1 80 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 IQCJQ1A5X6 159 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 REC114Q7Z4M0 266 aa16.75■□□□□ 0.27
PNKP-220ENST00000627232 DOPEY2Q9Y3R5 2298 aa16.74■□□□□ 0.27
PNKP-220ENST00000627232 ZNF324O75467 553 aaPredicted RBP16.74■□□□□ 0.27
PNKP-220ENST00000627232 FER1L6-AS1Q8NA97 138 aa16.74■□□□□ 0.27
PNKP-220ENST00000627232 FOXC2Q99958 501 aa16.74■□□□□ 0.27
PNKP-220ENST00000627232 LGALS9O00182 355 aa16.73■□□□□ 0.27
PNKP-220ENST00000627232 ORM1P02763 201 aa16.73■□□□□ 0.27
PNKP-220ENST00000627232 RPL11P62913 178 aaKnown RBP16.72■□□□□ 0.27
PNKP-220ENST00000627232 DMRTA1Q5VZB9 504 aa16.72■□□□□ 0.27
PNKP-220ENST00000627232 Q6ZWC4 215 aa16.72■□□□□ 0.27
PNKP-220ENST00000627232 OR10J6PQ8NGY7 276 aa16.72■□□□□ 0.27
PNKP-220ENST00000627232 TPPP3Q9BW30 176 aa16.72■□□□□ 0.27
PNKP-220ENST00000627232 AMTP48728 403 aa16.71■□□□□ 0.27
PNKP-220ENST00000627232 ZNF575Q86XF7 245 aa16.71■□□□□ 0.27
PNKP-220ENST00000627232 CELSR1Q9NYQ6 3014 aa16.71■□□□□ 0.27
PNKP-220ENST00000627232 CNFNQ9BYD5 112 aa16.7■□□□□ 0.26
PNKP-220ENST00000627232 TMEM213A2RRL7 107 aa16.7■□□□□ 0.26
PNKP-220ENST00000627232 ID1P41134 155 aa16.7■□□□□ 0.26
PNKP-220ENST00000627232 NAGKQ9UJ70 344 aa16.7■□□□□ 0.26
PNKP-220ENST00000627232 ABCA12Q86UK0 2595 aa16.69■□□□□ 0.26
PNKP-220ENST00000627232 TRBV7-9A0A0J9YWB2 115 aa16.69■□□□□ 0.26
PNKP-220ENST00000627232 SCGB1D1O95968 90 aa16.69■□□□□ 0.26
PNKP-220ENST00000627232 PMCHP20382 165 aa16.69■□□□□ 0.26
PNKP-220ENST00000627232 SVEP1Q4LDE5 3571 aa16.69■□□□□ 0.26
PNKP-220ENST00000627232 IGHV4OR15-8A0A075B7B6 117 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 A0A087WW49 117 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 CD5LO43866 347 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 HSBP1O75506 76 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 PKIAP61925 76 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 NIT1Q86X76 327 aa16.68■□□□□ 0.26
PNKP-220ENST00000627232 CHCHD1Q96BP2 118 aaKnown RBP16.68■□□□□ 0.26
PNKP-220ENST00000627232 PRR31Q5SQ13 230 aa16.67■□□□□ 0.26
PNKP-220ENST00000627232 RNASEKQ6P5S7 137 aaKnown RBP16.67■□□□□ 0.26
PNKP-220ENST00000627232 OR8A1Q8NGG7 326 aa16.67■□□□□ 0.26
PNKP-220ENST00000627232 DUX5Q96PT3 197 aa16.67■□□□□ 0.26
PNKP-220ENST00000627232 CREBBPQ92793 2442 aa16.66■□□□□ 0.26
PNKP-220ENST00000627232 APCP25054 2843 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms