RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 IDO1P14902 403 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 EVI2AP22794 236 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 DIAPH2-AS1Q14236 149 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 ZNF56Q15929 161 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 VMA21Q3ZAQ7 101 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 GOLT1AQ6ZVE7 132 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 SIGMAR1Q99720 223 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 MAP1LC3BQ9GZQ8 125 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 NMNAT1Q9HAN9 279 aaPredicted RBP-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 NAT8BQ9UHF3 227 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 CEP295Q9C0D2 2601 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 CCDC144AA2RUR9 1427 aa-0.48□□□□□ -2.49
SCN1A-208ENST00000625916 LAMA5O15230 3695 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 CELSR2Q9HCU4 2923 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 C10orf142B7Z368 130 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 RER1O15258 196 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 BANF1O75531 89 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 TMBIM6P55061 237 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 NEDD8Q15843 81 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 PPTC7Q8NI37 304 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 GRPEL2Q8TAA5 225 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 LINC00208Q96KT6 92 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 AP1S3Q96PC3 154 aa-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 PARD6GQ9BYG4 376 aaPredicted RBP-0.49□□□□□ -2.49
SCN1A-208ENST00000625916 ITPR3Q14573 2671 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 TNRC18O15417 2968 aaPredicted RBP-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 PCNX1Q96RV3 2341 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 K7ERJ3 54 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 TCRBP04435 133 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 CXCL1P09341 107 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 ARPP19P56211 112 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 SPA17Q15506 151 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 TAF1AQ15573 450 aaPredicted RBP-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 LIN52Q52LA3 116 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 ZCCHC23Q6ZST2 131 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 OR10X1Q8NGY0 326 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 FAM32AQ9Y421 112 aaKnown RBP-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 FLNBO75369 2602 aaKnown RBP-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 MAP1AP78559 2803 aaPredicted RBP-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 TACC2O95359 2948 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 FAT2Q9NYQ8 4349 aa-0.5□□□□□ -2.49
SCN1A-208ENST00000625916 TEX15Q9BXT5 2789 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 A0A1W2PRS3 328 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 FXYD1O00168 92 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 HIST1H2BKO60814 126 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 PIAS1O75925 651 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 HIST1H2BJP06899 126 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 IFITM1P13164 125 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 NCAPD3P42695 1498 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 LSM6P62312 80 aaKnown RBP-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 SNRPD3P62318 126 aaKnown RBP-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 CCDC168Q8NDH2 2452 aa-0.51□□□□□ -2.49
SCN1A-208ENST00000625916 TRPM1Q7Z4N2 1603 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 NISCHQ9Y2I1 1504 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 DSPPQ9NZW4 1301 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 IFNA14P01570 189 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 GYPBP06028 91 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 FXYD3Q14802 87 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 PTRHD1Q6GMV3 140 aaKnown RBP-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 FAM216BQ8N7L0 139 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 EFCAB11Q9BUY7 163 aa-0.52□□□□□ -2.49
SCN1A-208ENST00000625916 SPTBN2O15020 2390 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 CFAP46Q8IYW2 2715 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 TRAV5A0A0B4J249 113 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 TMEM114B3SHH9 223 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 ATP5HO75947 161 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 INSL3P51460 131 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 NCALDP61601 193 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 MSMO1Q15800 293 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 HACD4Q5VWC8 232 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 LINC00269Q8N2A0 174 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 OR8J2Q8NGG1 315 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 PPP1R14BQ96C90 147 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 OR2J1Q9GZK6 312 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 TPRKBQ9Y3C4 175 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 CTTNBP2Q8WZ74 1663 aa-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 GCN1Q92616 2671 aaKnown RBP-0.53□□□□□ -2.49
SCN1A-208ENST00000625916 LYSTQ99698 3801 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 ZFYVE9O95405 1425 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 ADGRL3Q9HAR2 1447 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 ADCY9O60503 1353 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 NBDYA0A0U1RRE5 68 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 NDUFC2O95298 119 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 TRGC2P03986 189 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 ETV6P41212 452 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 HSPE1P61604 102 aaKnown RBP-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 COX6A2Q02221 97 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 C5orf56Q8N8D9 126 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 OR4C12Q96R67 309 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 MRPL35Q9NZE8 188 aaKnown RBP-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 ASB4Q9Y574 426 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 FRMPD1Q5SYB0 1578 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 MYO7AQ13402 2215 aa-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 FLGP20930 4061 aaPredicted RBP-0.54□□□□□ -2.5
SCN1A-208ENST00000625916 NBEAQ8NFP9 2946 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 C3orf85A0A1B0GTC6 90 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 LOC101927531A0A1B0GV80 90 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 AIPO00170 330 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 MT-ND6P03923 174 aa-0.55□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms