RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SLC35B3Q9H1N7 401 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 MANBALQ9NQG1 85 aa14.42□□□□□ -0.1
UPF3A-211ENST00000618700 NUTF2P61970 127 aaKnown RBP14.41□□□□□ -0.1
UPF3A-211ENST00000618700 VGLL1Q99990 258 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 TM2D3Q9BRN9 247 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 AGPAT4-IT1Q9H0P7 198 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 GNG13Q9P2W3 67 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 EPDR1Q9UM22 224 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 RPH3ALQ9UNE2 315 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 NBEAL2Q6ZNJ1 2754 aa14.41□□□□□ -0.1
UPF3A-211ENST00000618700 HUWE1Q7Z6Z7 4374 aaKnown RBP14.41□□□□□ -0.1
UPF3A-211ENST00000618700 COL7A1Q02388 2944 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 SERTM2A0A1B0GWG4 89 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 TCRAP04437 139 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 CT45A10P0DMU9 189 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 ATP5G3P48201 142 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 GOLT1AQ6ZVE7 132 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 Q6ZWC4 215 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 LINC00477Q96M19 166 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 TCEAL7Q9BRU2 100 aa14.4□□□□□ -0.1
UPF3A-211ENST00000618700 CST9LP1Q5W188 147 aa14.39□□□□□ -0.11
UPF3A-211ENST00000618700 FAM19A4Q96LR4 140 aa14.39□□□□□ -0.11
UPF3A-211ENST00000618700 ATG101Q9BSB4 218 aa14.39□□□□□ -0.11
UPF3A-211ENST00000618700 TENM3Q9P273 2699 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 M0R2Z0 102 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 AMBPP02760 352 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 FXYD7P58549 80 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 SPINK13Q1W4C9 94 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 DEFB135Q30KP9 77 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 TMEM78Q5T7P6 136 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 CYB561D1Q8N8Q1 229 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 CSNK1G2-AS1Q8NCQ2 148 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 C1QTNF4Q9BXJ3 329 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 PPP1R14DQ9NXH3 145 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 XCL2Q9UBD3 114 aa14.38□□□□□ -0.11
UPF3A-211ENST00000618700 C11orf94C9JXX5 98 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 PEX7O00628 323 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 IFNA1P01562 189 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 BCL2P10415 239 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 ZNF138P52744 262 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 Q8TAT8 98 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 HIST1H2BAQ96A08 127 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 SPATA25Q9BR10 227 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 ZNF492Q9P255 531 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 TP53TG1Q9Y2A0 90 aa14.37□□□□□ -0.11
UPF3A-211ENST00000618700 CRXO43186 299 aaPredicted RBP14.36□□□□□ -0.11
UPF3A-211ENST00000618700 NMBP08949 121 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 NHLRC4P0CG21 123 aaPredicted RBP14.36□□□□□ -0.11
UPF3A-211ENST00000618700 CDKN1BP46527 198 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 IFITM2Q01629 132 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 RNF183Q96D59 192 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 RETNQ9HD89 108 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 LENEPQ9Y5L5 61 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 TGP01266 2768 aa14.36□□□□□ -0.11
UPF3A-211ENST00000618700 TRAV8-1A0A0A6YYK1 113 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 TRBV7-9A0A0J9YWB2 115 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 IGLV2-11P01706 119 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 CRISP2P16562 243 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 TSPOP30536 169 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 TAGLN2P37802 199 aaKnown RBP14.35□□□□□ -0.11
UPF3A-211ENST00000618700 LEPP41159 167 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 TMEM75Q8N9X5 138 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 IGF2BP2-AS1Q96M15 143 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 TXNDC17Q9BRA2 123 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 OVOL2Q9BRP0 275 aa14.35□□□□□ -0.11
UPF3A-211ENST00000618700 K7EQM0 130 aa14.34□□□□□ -0.11
UPF3A-211ENST00000618700 ZFAND2AQ8N6M9 145 aa14.34□□□□□ -0.11
UPF3A-211ENST00000618700 PCNPQ8WW12 178 aaKnown RBP14.34□□□□□ -0.11
UPF3A-211ENST00000618700 RCHY1Q96PM5 261 aa14.34□□□□□ -0.11
UPF3A-211ENST00000618700 LOC102723971A0A1B0GUV8 181 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 SCO2A0A1W2PP80 73 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 FBLL1A6NHQ2 334 aaKnown RBP14.33□□□□□ -0.12
UPF3A-211ENST00000618700 KLLNB2CW77 178 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 F6UZH7 168 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 SPRY2O43597 315 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 MEF2BQ02080 365 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-211ENST00000618700 KIR3DS1Q14943 382 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 ZNF767PQ75MW2 155 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 C11orf52Q96A22 123 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 LINC00479Q96M42 142 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 ZMAT4Q9H898 229 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 VAX2Q9UIW0 290 aa14.33□□□□□ -0.12
UPF3A-211ENST00000618700 TRAV12-2A0A075B6T6 113 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 INSP01308 110 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 GFI1BQ5VTD9 330 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 ZNF705AQ6ZN79 300 aaPredicted RBP14.32□□□□□ -0.12
UPF3A-211ENST00000618700 C1orf158Q8N1D5 194 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 C2CD4CQ8TF44 421 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 PSG8Q9UQ74 426 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 KLF12Q9Y4X4 402 aa14.32□□□□□ -0.12
UPF3A-211ENST00000618700 RBMY1A1P0DJD3 496 aaKnown RBP14.31□□□□□ -0.12
UPF3A-211ENST00000618700 RBMY1CP0DJD4 496 aa14.31□□□□□ -0.12
UPF3A-211ENST00000618700 FLI1Q01543 452 aaPredicted RBP14.31□□□□□ -0.12
UPF3A-211ENST00000618700 RBMY1FQ15415 496 aaKnown RBP14.31□□□□□ -0.12
UPF3A-211ENST00000618700 PRR9Q5T870 116 aa14.31□□□□□ -0.12
UPF3A-211ENST00000618700 TVP23CQ96ET8 276 aa14.31□□□□□ -0.12
UPF3A-211ENST00000618700 SGK494Q96LW2 274 aa14.31□□□□□ -0.12
UPF3A-211ENST00000618700 TRAV34A0A0B4J273 112 aa14.3□□□□□ -0.12
UPF3A-211ENST00000618700 RBFOX3A6NFN3 312 aa14.3□□□□□ -0.12
UPF3A-211ENST00000618700 ZNF506Q5JVG8 444 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms