RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 IGLC1P0CG04 106 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 CGB3P0DN86 165 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 CGB7P0DN87 165 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 PLNP26678 52 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 UBE2V1Q13404 147 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 MPV17L2Q567V2 206 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 LCN12Q6JVE5 192 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 TMEM101Q96IK0 257 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 RITA1Q96K30 269 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 CHD3Q12873 2000 aaKnown RBP11.02□□□□□ -0.65
CIITA-213ENST00000618327 SRSF1Q07955 248 aaKnown RBP eCLIP11.02□□□□□ -0.65
CIITA-213ENST00000618327 PDE6HQ13956 83 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 Q8N7P7 452 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 THAP8Q8NA92 274 aa11.02□□□□□ -0.65
CIITA-213ENST00000618327 C5orf42Q9H799 3197 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 ZNF688P0C7X2 276 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 IGHV4-38-2P0DP08 117 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 DEFB112Q30KQ8 113 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 LINC01587Q99440 93 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 IGKCP01834 107 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 STHQ8IWL8 128 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 CD7P09564 240 aa11.01□□□□□ -0.65
CIITA-213ENST00000618327 C3orf79P0CE67 100 aa11□□□□□ -0.65
CIITA-213ENST00000618327 IFI27P40305 119 aaPredicted RBP11□□□□□ -0.65
CIITA-213ENST00000618327 SYNJ2BPP57105 145 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PRR20EP86478 221 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PRR20CP86479 221 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PRR20DP86480 221 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PRR20BP86481 221 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PRR20AP86496 221 aa11□□□□□ -0.65
CIITA-213ENST00000618327 TMEM249Q2WGJ8 235 aa11□□□□□ -0.65
CIITA-213ENST00000618327 SLC25A2Q9BXI2 301 aa11□□□□□ -0.65
CIITA-213ENST00000618327 ZNF138P52744 262 aa11□□□□□ -0.65
CIITA-213ENST00000618327 PSG3Q16557 428 aa11□□□□□ -0.65
CIITA-213ENST00000618327 ORMDL2Q53FV1 153 aa11□□□□□ -0.65
CIITA-213ENST00000618327 BCL6BQ8N143 479 aaPredicted RBP11□□□□□ -0.65
CIITA-213ENST00000618327 NPBQ8NG41 125 aa11□□□□□ -0.65
CIITA-213ENST00000618327 LINC00479Q96M42 142 aa11□□□□□ -0.65
CIITA-213ENST00000618327 VWC2Q2TAL6 325 aa11□□□□□ -0.65
CIITA-213ENST00000618327 TRAV2A0A0B4J234 112 aa11□□□□□ -0.65
CIITA-213ENST00000618327 RNF182Q8N6D2 247 aa11□□□□□ -0.65
CIITA-213ENST00000618327 Q8TAT8 98 aa11□□□□□ -0.65
CIITA-213ENST00000618327 WFDC12Q8WWY7 111 aa11□□□□□ -0.65
CIITA-213ENST00000618327 DSCAMO60469 2012 aa11□□□□□ -0.65
CIITA-213ENST00000618327 IGHV4-59P01825 116 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 PPIFP30405 207 aaKnown RBP10.99□□□□□ -0.65
CIITA-213ENST00000618327 LINC00574Q9H8X3 128 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 ZFAND6Q6FIF0 208 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 IL17RELQ6ZVW7 336 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 GTSF1LQ9H1H1 148 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 SAP30O75446 220 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 SMPXQ9UHP9 88 aa10.99□□□□□ -0.65
CIITA-213ENST00000618327 LSM4Q9Y4Z0 139 aaKnown RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 TRAV8-4A0A0B4J246 113 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 RBMY1BA6NDE4 496 aaKnown RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 RBMY1EA6NEQ0 496 aaKnown RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 RBMY1DP0C7P1 496 aaKnown RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 RBMY1A1P0DJD3 496 aaKnown RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 RBMY1CP0DJD4 496 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 PGPEP1Q9NXJ5 209 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 A0A087X0K7 114 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 PROP1O75360 226 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 SSBP2P81877 361 aaPredicted RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 CD300EQ496F6 205 aaPredicted RBP10.98□□□□□ -0.65
CIITA-213ENST00000618327 ERG28Q9UKR5 140 aa10.98□□□□□ -0.65
CIITA-213ENST00000618327 GAGE12BA1L429 117 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 LINC00477Q96M19 166 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 CHTOPQ9Y3Y2 248 aaKnown RBP10.97□□□□□ -0.65
CIITA-213ENST00000618327 TRBV19A0A075B6N1 114 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 IGHV7-81A0A0B4J1V7 117 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 hDV102S1A0JD36 115 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 FCN3O75636 299 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 EVI2AP22794 236 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 ACTL10Q5JWF8 245 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 MRPL52Q86TS9 123 aaKnown RBP10.97□□□□□ -0.65
CIITA-213ENST00000618327 VPREB3Q9UKI3 123 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 LAMA3Q16787 3333 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 LINC01559Q495D7 138 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 SIRPDQ9H106 197 aa10.97□□□□□ -0.65
CIITA-213ENST00000618327 BRCA2P51587 3418 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 GGTLC3B5MD39 225 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 H3BRN7 92 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 IGLV2-23P01705 113 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 Q86TA4 180 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 EXPH5Q8NEV8 1989 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 HIVEP2P31629 2446 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 F2Z2F3 143 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 NDUFA4O00483 81 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 EREGO14944 169 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 UTF1Q5T230 341 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 RASL11AQ6T310 242 aa10.96□□□□□ -0.65
CIITA-213ENST00000618327 IGKV3D-20A0A0C4DH25 116 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 FSTL3O95633 263 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 LMO4P61968 165 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 A8MWP6 167 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 GTSCR1Q86UQ5 136 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 ZNF491Q8N8L2 437 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 ZNF114Q8NC26 417 aa10.96□□□□□ -0.66
CIITA-213ENST00000618327 C11orf68Q9H3H3 251 aaKnown RBP10.96□□□□□ -0.66
CIITA-213ENST00000618327 TNCP24821 2201 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms