RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 VPS13DQ5THJ4 4388 aa9.7□□□□□ -0.86
LINC00540-202ENST00000616974 PGPA6NDG6 321 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 PFDN1O60925 122 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 HTN1P15515 57 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 UBE2G2P60604 165 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 PQLC2Q6ZP29 291 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 AAMDCQ9H7C9 122 aa9.69□□□□□ -0.86
LINC00540-202ENST00000616974 YTHDF2Q9Y5A9 579 aaKnown RBP9.69□□□□□ -0.86
LINC00540-202ENST00000616974 DUSP14O95147 198 aaKnown RBP9.68□□□□□ -0.86
LINC00540-202ENST00000616974 BTN1A1Q13410 526 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 OR10J6PQ8NGY7 276 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 IGF2BP2-AS1Q96M15 143 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 FRAS1Q86XX4 4008 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 ALMS1Q8TCU4 4167 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 CDKN1BP46527 198 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 AKR1C8PQ5T2L2 129 aa9.68□□□□□ -0.86
LINC00540-202ENST00000616974 ACTR3CQ9C0K3 210 aaPredicted RBP9.68□□□□□ -0.86
LINC00540-202ENST00000616974 TRAV12-3A0A0B4J271 114 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 DIRC3C9JPN6 131 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 FAM74A1Q5RGS3 127 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 SUN5Q8TC36 379 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 TVP23CQ96ET8 276 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 FAM19A4Q96LR4 140 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 C1QTNF4Q9BXJ3 329 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 CTXND1A0A1B0GTU2 59 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 MBP02144 154 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 GOLT1AQ6ZVE7 132 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 ZFAND2AQ8N6M9 145 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 FAM213BQ8TBF2 198 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 LINC00479Q96M42 142 aa9.67□□□□□ -0.86
LINC00540-202ENST00000616974 MUC4Q99102 2169 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 PLAC8L1A1L4L8 177 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 MAP1LC3B2A6NCE7 125 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 INSP01308 110 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 C9orf47Q6ZRZ4 202 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 MRPL53Q96EL3 112 aaKnown RBP9.66□□□□□ -0.86
LINC00540-202ENST00000616974 MAP1LC3BQ9GZQ8 125 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 C11orf68Q9H3H3 251 aaKnown RBP9.66□□□□□ -0.86
LINC00540-202ENST00000616974 PPP1R14DQ9NXH3 145 aa9.66□□□□□ -0.86
LINC00540-202ENST00000616974 SEC11BP0C7V7 166 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 SUMO1P63165 101 aaKnown RBP9.65□□□□□ -0.86
LINC00540-202ENST00000616974 CCL20P78556 96 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 TMEM208Q9BTX3 173 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 OTORQ9NRC9 128 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 CXorf1O96002 111 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 MIFP14174 115 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 ZFP69Q49AA0 526 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 Q6ZTC4 211 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 STOML3Q8TAV4 291 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 ZNF492Q9P255 531 aa9.65□□□□□ -0.86
LINC00540-202ENST00000616974 RNASE4P34096 147 aaKnown RBP9.64□□□□□ -0.87
LINC00540-202ENST00000616974 TRAV34A0A0B4J273 112 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 LOC102723971A0A1B0GUV8 181 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 KLLNB2CW77 178 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 SLC25A5P05141 298 aaKnown RBP9.64□□□□□ -0.87
LINC00540-202ENST00000616974 TPT1P13693 172 aaKnown RBP9.64□□□□□ -0.87
LINC00540-202ENST00000616974 LYPD1Q8N2G4 141 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 C11orf45Q8TAV5 145 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 LINC01587Q99440 93 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 TP53TG3Q9ULZ0 132 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 PRELID1Q9Y255 219 aa9.64□□□□□ -0.87
LINC00540-202ENST00000616974 CXorf65A6NEN9 183 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 FAM74A7A6NL05 159 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 F6UZH7 168 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 ZNF324O75467 553 aaPredicted RBP9.63□□□□□ -0.87
LINC00540-202ENST00000616974 IGLV2-11P01706 119 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 ATP5G3P48201 142 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 C12orf74Q32Q52 190 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 SFT2D1Q8WV19 159 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 GOLT1BQ9Y3E0 138 aa9.63□□□□□ -0.87
LINC00540-202ENST00000616974 TMEM78Q5T7P6 136 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 FAM222AQ5U5X8 452 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 C8orf49Q96NF6 230 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 NEU1Q99519 415 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 C3orf84H3BNL1 204 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 TCRAP04437 139 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 ZNF138P52744 262 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 RRN3P1Q2M238 152 aa9.62□□□□□ -0.87
LINC00540-202ENST00000616974 HBE1P02100 147 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 CRISP2P16562 243 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 ALKAL2Q6UX46 152 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 CMTM2Q8TAZ6 248 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 PHLDA1Q8WV24 401 aaPredicted RBP9.61□□□□□ -0.87
LINC00540-202ENST00000616974 LINC00477Q96M19 166 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 DKK2Q9UBU2 259 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 C7orf71A4D174 169 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 GPX1P07203 203 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 CSN1S1P47710 185 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 ZNF80P51504 273 aaPredicted RBP9.61□□□□□ -0.87
LINC00540-202ENST00000616974 MUC21Q5SSG8 566 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 TMEM167BQ9NRX6 74 aa9.61□□□□□ -0.87
LINC00540-202ENST00000616974 PAGE4O60829 102 aa9.6□□□□□ -0.87
LINC00540-202ENST00000616974 C5orf17Q8NAS9 161 aa9.6□□□□□ -0.87
LINC00540-202ENST00000616974 RNASE8Q8TDE3 154 aaKnown RBP9.6□□□□□ -0.87
LINC00540-202ENST00000616974 MBD3L1Q8WWY6 194 aa9.6□□□□□ -0.87
LINC00540-202ENST00000616974 ODF3Q96PU9 254 aa9.6□□□□□ -0.87
LINC00540-202ENST00000616974 EPDR1Q9UM22 224 aa9.6□□□□□ -0.87
LINC00540-202ENST00000616974 LEPP41159 167 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 SLC51BQ86UW2 128 aa9.59□□□□□ -0.87
LINC00540-202ENST00000616974 DNAH2Q9P225 4427 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms