RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TMEM75Q8N9X5 138 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 UBE2E1P51965 193 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 SYNJ2BPP57105 145 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 MRPL52Q86TS9 123 aaKnown RBP11.2□□□□□ -0.62
CPSF1-212ENST00000616140 COX11Q9Y6N1 276 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 M0R2P5 195 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 IGHV3-53P01767 116 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 MALP21145 153 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 POU2AF1Q16633 256 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 RUSC1-AS1Q66K80 236 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 MORN3Q6PF18 240 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-212ENST00000616140 TEX43Q6ZNM6 134 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 RNF138Q8WVD3 245 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 CHAC1Q9BUX1 264 aa11.2□□□□□ -0.62
CPSF1-212ENST00000616140 FAM223BA6NKX1 122 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 K7ENP7 123 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 IGLC1P0CG04 106 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 RPL36AP83881 106 aaKnown RBP11.19□□□□□ -0.62
CPSF1-212ENST00000616140 PRSS57Q6UWY2 283 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 FAM223AQ8IWN6 122 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 RPL36ALQ969Q0 106 aaKnown RBP11.19□□□□□ -0.62
CPSF1-212ENST00000616140 C1orf159Q96HA4 380 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 PRR25Q96S07 402 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 TECTAO75443 2155 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 DKK1O94907 266 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 IL17RELQ6ZVW7 336 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 C11orf53Q8IXP5 236 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 FAM110DQ8TAY7 271 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-212ENST00000616140 PLEKHB2Q96CS7 222 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 IGLL1P15814 213 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 PLA2G2CQ5R387 149 aa11.19□□□□□ -0.62
CPSF1-212ENST00000616140 SAP30O75446 220 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 LINC00158P58513 81 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 Q5PR19 223 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 UBE2E2Q96LR5 201 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 HIVEP3Q5T1R4 2406 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 FXYD5Q96DB9 178 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 PGPEP1Q9NXJ5 209 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 ZNF415Q09FC8 603 aa11.18□□□□□ -0.62
CPSF1-212ENST00000616140 PRSS46E5RG02 174 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 NSUN5P1Q3KNT7 163 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 LCNL1Q6ZST4 164 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.17□□□□□ -0.62
CPSF1-212ENST00000616140 SMIM27A0A1W2PRY6 76 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 A0A087WX48 190 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 MSRB2Q9Y3D2 182 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 DEFB131AP59861 70 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 C2orf66Q6UXQ4 117 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 PLA2G2EQ9NZK7 142 aa11.17□□□□□ -0.62
CPSF1-212ENST00000616140 ESDP10768 282 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 MRPL51Q4U2R6 128 aaKnown RBP11.16□□□□□ -0.62
CPSF1-212ENST00000616140 PRSS47A8MTI9 375 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 TMEM86BQ8N661 226 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 KLHL30-AS1Q8NEE0 82 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 PHLDA1Q8WV24 401 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-212ENST00000616140 DLX4Q92988 240 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-212ENST00000616140 SPXQ9BT56 116 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 IGHV1-24A0A0C4DH33 117 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 KNCNA6PVL3 124 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 HIVEP2P31629 2446 aa11.16□□□□□ -0.62
CPSF1-212ENST00000616140 ZC2HC1AQ96GY0 325 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 CENPFP49454 3210 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 TRAV13-1A0A0B4J241 112 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 K7EN84 100 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 ATXN8Q156A1 80 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 UNQ6494/PRO21346Q6UXR6 183 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 C8orf86Q6ZUL3 223 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 GTSF1LQ9H1H1 148 aa11.15□□□□□ -0.62
CPSF1-212ENST00000616140 MSMBP08118 114 aa11.15□□□□□ -0.63
CPSF1-212ENST00000616140 WT1P19544 449 aaPredicted RBP11.15□□□□□ -0.63
CPSF1-212ENST00000616140 SPINK13Q1W4C9 94 aa11.15□□□□□ -0.63
CPSF1-212ENST00000616140 VWC2Q2TAL6 325 aa11.15□□□□□ -0.63
CPSF1-212ENST00000616140 CDPF1Q6NVV7 123 aa11.15□□□□□ -0.63
CPSF1-212ENST00000616140 TMEM14CQ9P0S9 112 aa11.15□□□□□ -0.63
CPSF1-212ENST00000616140 H3BRN7 92 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 MAPK1IP1LQ8NDC0 245 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 SSBP2P81877 361 aaPredicted RBP11.14□□□□□ -0.63
CPSF1-212ENST00000616140 KAAG1Q9UBP8 84 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 PAX4O43316 350 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 ZNF491Q8N8L2 437 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 THAP8Q8NA92 274 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 ANAPC13Q9BS18 74 aa11.14□□□□□ -0.63
CPSF1-212ENST00000616140 RPL35AP18077 110 aaKnown RBP11.13□□□□□ -0.63
CPSF1-212ENST00000616140 LY6G5BQ8NDX9 201 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 SIGLEC8Q9NYZ4 499 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 CTSZQ9UBR2 303 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 TP53TG1Q9Y2A0 90 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 NAV3Q8IVL0 2385 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 IGLC7A0M8Q6 106 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 CKS1BP61024 79 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 Q6ZSR3 168 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 C11orf68Q9H3H3 251 aaKnown RBP11.13□□□□□ -0.63
CPSF1-212ENST00000616140 EP400Q96L91 3159 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 C22orf46C9J442 243 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 SLC25A20O43772 301 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 NPSP0C0P6 89 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 GAGE2BQ13066 116 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 GAGE2EQ4V326 116 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 GAGE2DQ9UEU5 116 aa11.13□□□□□ -0.63
CPSF1-212ENST00000616140 TRAV8-4A0A0B4J246 113 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms