RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 NDUFS8O00217 210 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 SLC25A16P16260 332 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 Q0VG73 95 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 C9orf139Q6ZV77 190 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 DAZ1Q9NQZ3 744 aaKnown RBP7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 IGHV4-59P01825 116 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 FREM1Q5H8C1 2179 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 RIPPLY3P57055 190 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 CR1LQ2VPA4 569 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 NEGR1Q7Z3B1 354 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 DYSFO75923 2080 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 UBE2E2Q96LR5 201 aa7.01□□□□□ -1.29
PDLIM5-222ENST00000615540 NCOA6Q14686 2063 aaPredicted RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 DEFB112Q30KQ8 113 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 MRPL51Q4U2R6 128 aaKnown RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 C19orf54Q5BKX5 351 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 CFHR4Q92496 578 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 DPM2O94777 84 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 TYMSP04818 313 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 PDE6HQ13956 83 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 CDSNQ15517 529 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 TEX29Q8N6K0 151 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 ZNF503Q96F45 646 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 FAM167A-AS1Q96KT0 104 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 PRR25Q96S07 402 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 MRPL27Q9P0M9 148 aaKnown RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 DOCK10Q96BY6 2186 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 OR11H12B2RN74 326 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 H3BUT2 72 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 STPG4Q8N801 248 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 OR11H1Q8NG94 326 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 OR11H2Q8NH07 326 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 CSTL1Q9H114 145 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 SMG1Q96Q15 3661 aaKnown RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 TNRC18O15417 2968 aaPredicted RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 TNFRSF6BO95407 300 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 TANC2Q9HCD6 1990 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 NPC2P61916 151 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 SPINK13Q1W4C9 94 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 PRSS57Q6UWY2 283 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 ALKBH7Q9BT30 221 aaPredicted RBP7□□□□□ -1.29
PDLIM5-222ENST00000615540 CACNA1DQ01668 2161 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 ESPL1Q14674 2120 aa7□□□□□ -1.29
PDLIM5-222ENST00000615540 PRSS46E5RG02 174 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 FOXE3Q13461 319 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 DEFB136Q30KP8 78 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 KNCNA6PVL3 124 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 PRSS2P07478 247 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 CD300EQ496F6 205 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 TRGV2A0A075B6R0 118 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 SRSF2Q01130 221 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 SMIM12Q96EX1 92 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 GEMIN7Q9H840 131 aaKnown RBP6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 A8MWP6 167 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 OR2K2Q8NGT1 345 aa6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 ZNF418Q8TF45 676 aaPredicted RBP6.99□□□□□ -1.29
PDLIM5-222ENST00000615540 IGKV1D-37A0A075B6S9 117 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 J3QR89 54 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 DUSP14O95147 198 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 EGR2P11161 476 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 ANXA2RQ3ZCQ2 193 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 WIPF2Q8TF74 440 aaPredicted RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 MRPL16Q9NX20 251 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 IGLV11-55A0A075B6I3 123 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 IGLV1-47P01700 117 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 DEFB1P60022 68 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 BLCAPP62952 87 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 FAM231DQ6ZW35 169 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 NUTF2P61970 127 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 TRGV11A0A075B6L2 103 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 HTN3P15516 51 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 Q8N9W7 124 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 NHP2Q9NX24 153 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 TMEM8BA6NDV4 472 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 LINC01548A6NM66 108 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 CGB3P0DN86 165 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 CGB7P0DN87 165 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 CD28P10747 220 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 DEFB131AP59861 70 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 SUMO2P61956 95 aaKnown RBP6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 FAM104BQ5XKR9 115 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 DPH3P1Q9H4G8 78 aa6.98□□□□□ -1.29
PDLIM5-222ENST00000615540 APOMO95445 188 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 NPYP01303 97 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 PPBPP02775 128 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 MEIG1Q5JSS6 88 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 TMEM238LA0A1B0GVL6 79 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 A6NJY4 79 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 H7C1H1 209 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 IGKV1-17P01599 117 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 PHLDA1Q8WV24 401 aaPredicted RBP6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 MED12LQ86YW9 2145 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 MAP1BP46821 2468 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 PRAC2D3DTV9 90 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 RPL13AP40429 203 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 CFHR3Q02985 330 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 SPENQ96T58 3664 aaKnown RBP6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 PCSK5Q92824 1860 aa6.97□□□□□ -1.29
PDLIM5-222ENST00000615540 IGHV3-16A0A0C4DH30 117 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms